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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag

Basic information

species Glycine max
transcript GLYMA09G29970.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgtt--ctttttatatttac---atatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag
| | ||||| |||||||| || || || ||  | ||||||||||| ||||| ||  |||||||||||||||| || || ||||| ||||||||  | ||||| | || | | ||| | |||| |  |  || ||||| ||   || |    |      || ||  || |     |   ||  ||     |  |  |||| | |      |  | ||   |   ||  ||   
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTCCAGgtatttgttttaccgagttatgatgtccattaatattgacttaatgtttcacaaccaataatggaatatgagactacaatttttcacattgattgaatatttttt----ctttgttgtgcccttggcag---

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctag-tctaatactgtcataaacacttttcaacttatgtgagcag
| | ||||| |||||||| || || || ||  | || |||||||| ||||| ||  |||||||||||||||| || || ||||| ||||||||  ||||||| | |  || ||   | |||   ||  |  |   |   | |    ||    |||     | |   | | | ||   ||||   ||| | | ||| | |  |      | | |  |||    |     
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTACGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTGCAGgtat-tactgagctaggttatccactaatgttgacttattgtttgactaccagtaacaaaa-cacgattctacaatttttcacatagatttgatatttttttctttgttgtaccccttggcag-----

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag
|||||||||||||||||| || || || ||||| |||||||| || || |||||| | ||||||||||| || || |||||||| |||||||| ||||||||| |        | |  |   | ||  | |  ||||  |||      ||||  ||||   ||| |  ||||| | ||   |   | | |  | | |                              
GTTAATAGTATGTGAACTTCTCAAGGCAAACTTGTATGAGTTCCAAAAGTTTAATAGGGAATCAGGGGGAGAGGTTTATTTCACTATGCCAAGATTGCAGgttagc----caacatctttactactcatcagttttatgtat------gttttcactgc--tctctcattttc-ttctaaatcaaaatattgtgcag------------------------------

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag
| |||| ||||||||||| ||||| |||||  |||| ||||| |||||||||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||      ||    |||  |     || ||  | | || ||| | | |||| |  |||   |  | |     ||||  |   ||    ||| |                              
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgt------ccactttatcattaccatacatc-atagat-atg-tatatgta-tccgattcctgatct-----ctttgggaccgttctgtacag------------------------------

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag
| |||| ||||||||||| ||||| |||||  |||| || || |||||||||||  |||||||||| |||||||| ||||||||||||||||| ||||||||||||   |   | | ||      | || |||  ||  ||| |  | |   || ||    ||||| |  |   ||  | | |                                            
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtc-cgcttcatcattaacattcttaatagatatgtataaatccg--agttctaatctctttgggatcgttctgtacag--------------------------------------------

upper sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgc-tagtctaatactgtcataaacacttttcaacttatgtgagcag
 ||||| ||||| ||||| || || || ||||| ||||||||||| ||||||||| ||||||| || || || || || ||||| |||||||| |||||||||   |   | |  |  ||   |  | |  |  |  | ||      || | ||| ||| | ||    |||| |    |||||   ||                                        
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggta-tgtaacctgc--ttttaaattgttctgtgcag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404434|gb|EV274248.1|EV274248
EST:     TTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAG                         TCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA
genomic: TTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtg ... atgtgagcagTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA