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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCTGGAGGAGCAAAGATGACTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaatatatgacttgatacatgtgtttgattttttttatgcaattaatatctttgtatatatatgctgtttaggcggtttgtatatgtctcacttt...

Basic information

species Glycine max
transcript GLYMA09G29900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29900.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G17760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTGTCTGGAGGAGCAAAGATGACTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaatatatgacttgatacatgtgtttgattttttttatgcaattaatatctttgtatatatatgctgtttaggcggtttgtatatgtctcacttt
||||||||||| |  |||||||| |||||||| |||||||| || ||||| || ||  | ||| ||||||| |||||||||||  | || ||||| ||||||    || |||  |  ||     | | |   ||    |  || ||    || || ||  | | |     |||||      |||| |             
GTTGTCTGGAGAACAAAAGATGATTTGCCAGAGGAACTTGTCTTCCACATCAACTACTTGGGAGCTGATCAACCCACTTTCACTCTCAACTTCTCAAAAGgtttgtaaaataaaaactggc---tttatccaatcaaatccat-catcacatttcctttaagaaactcaatgttt---tcttttgcag------------

upper sequence: GLYMA09G29900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g00920.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTCTGGAGGAGCAAAGATGACTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaatatatgacttgatacatgtgtttga----ttttttttatgcaattaat-atctttgtatatatatgc---tgtttaggcggtttgtatatgtctcacttt
|| || ||||||| |||||||||||||||||| || ||| | ||||||||||| || || ||||||||||| || ||||||||  | || |||||||||||||   |||||||      || ||||   ||      |||||| ||   | || ||   ||| ||  |     |      || ||   |   ||   ||  |      
GTGGTGTGGAGGACCAAAGATGACTTGCCAGAGGAGCTTATATTTCACATAAACTACCTGGGATCTGATCAACCTACTTTCACCCTCAACTTCTCCAAAGgta---aatatatcctcaaatccatgctcttagggtgttttttctaacaagttgattgccttcgtcaagcccagtaaacattcagagagccagttggtgattg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782471|gb|GD754924.1|GD754924
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTT
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTT
EST: gi|208146048|gb|GD944779.1|GD944779
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|254325626|gb|GR838507.1|GR838507
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|208093930|gb|GD896147.1|GD896147
EST:     AATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTTCTCCAAAG                         GATCTAGTCAAATT
genomic: AATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTT-CTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATT
EST: gi|208042647|gb|GD842235.1|GD842235
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|254340149|gb|GR858274.1|GR858274
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|208209342|gb|GE008162.1|GE008162
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|208139517|gb|GD937275.1|GD937275
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATTGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|10255048|gb|BE822814.1|BE822814
EST:     GATCAGCCCACTTTCACATTGAATTTCTCCAAAN                         NANNTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCNTNGCTTTG
genomic: GATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTATCAATTGATTCGGCTTGGCTTTG
EST: gi|208255612|gb|GE052271.1|GE052271
EST:     AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAG                         GATCTAGTCAAATTATTGCTCAATATTAATCAATTGATT
genomic: AAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGgtaacaaata ... ctgttgacagGATCTAGTCAAATTATAGCTCAATATTA-TCAATTGATT