Sequence
atgc intronic sequence ATGC exonic sequenceCACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAgtatgataatcgccttgttctgtgctctttatgtaagtaaaaatgcatttgtcttttcttccttttatttaaacacaaatagagcctttcttaaaatttagctcactatctcattattttgcgttaagcag
Basic information
species | Glycine max |
transcript | GLYMA09G28470.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G28470.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g35640.1 (Oryza sativa), 5'ss of exon 4
CACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAgtatgataatcgccttgttctgtgctctttatgtaag-taaaaatgcatttgtcttttcttccttttattta-aacacaaatagagcctttcttaaaatttagctcactatctcattattttgcgttaagcag
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------------------TCCCAAAAGGCAATTTGACATGATGCTTGATTCTGTGCGGATATATGCAACTGCTGTATACATTGCAAGCATCATAATTGCTCTGTTCTGTGCTCTCTTTgtaagacaattttaaatttaacaggtgtaaattagttttgtatcatgcttcaatttaattgtataatat-gctaaatggctctattttttatttacag---
upper sequence: GLYMA09G28470.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 4
CACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAgtatgataatcgccttgttctgtgctctttatgtaagtaaaaatgc--atttgtcttttcttccttttatttaaacacaaatagagcctttcttaaaatttagctcactatctc--attattttgcgttaagcag---------
|| ||| |||||||||| |||||||| || |||| ||||| |||||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||||||||| || || | | | || || | || | || | | | || |||| ||| | | || | | ||||| | || | |
------------------CCCAAAACGGCAAGTGACCATGATGCTTGACCCTGTTCGTATTTATGCAACAGCCATATACCTTGCAAGTATAATAATTGCCTTGTTTTGTGCTCTCTATgtaagttgccttgtggatatatgtatttccactgtcatcttaa-atatccttattctaccttaccttttggtttctcatgttggacaatttttcattgattggattgggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31306731|gb|CD391934.1|CD391934EST: AATGATGCTTGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAA GTTCATAACAAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCA
genomic: AATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAgtatgataat ... cgttaagcagGTTCATAACAAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAGCATTCCTTATAGGTCCTAAAAGGCAAGTGACAATGATGCTGGATCCTGCCCGTATATATGCAACAGCCATATACATTGCAAgtatgataatcgccttgttctgtgctctttatgtaagtaaaaatgcatttgtcttttcttccttttatttaaacacaaatagagcctttcttaaaatttagctcactatctcattattttgcgttaagcag
- - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - GCTGGA