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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCAGAAGTGGCATGCATATGGGCAATCAAAGCTTGCCAACATTTTACATGCCAACGAACTTACAAGACTTCTTAAAgtatgttgatatttattgtattgtaaaatgattaatatgctattatgttcaggaagatgtgtctgatatatctaatattaatcattacatcatggtcag

Basic information

species Glycine max
transcript GLYMA09G25080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25080.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 4
TTACCAGAAGTGGCATGCATATGGGCAATCAAAGCTTGCCAACATTTTACATGCCAACGAACTTACAAGACTTCTTAAAgtatg--ttgatatt-tattgtattgtaaaatgattaatatgc-tattatgttcaggaagatgtgtctgatatatctaatattaatcattacatcatggtcag
 ||| |          ||||||||||| ||||||||||| |||||||| ||||| || |||||| | ||     |||| ||  |  ||| | || | ||  ||  |      | | |||    |||| | ||  |    | |  | |  |     | || | |||    | ||  |  |   
GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgc-tgtatttggagttatttcaattgagatatgtttatt--

upper sequence: GLYMA09G25080.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G009940_T02 (Zea mays), 5'ss of exon 5
--TTACCAGAAGTGGCATGCATATGGGCAATCAAAGCTTGCCAACATTTTACATGCCAACGAACTTACAAGACTTCTTAAAgtatgttgatatttattgtattgtaaaatgattaat--atgctattatgttcaggaagatgtgtctgatatatctaatattaatcattacatcatggtcag
   ||  || | |||  |||||||||||||||||||||||| ||||| || ||||| || |||||| | || |   || | ||||||   | |  ||   |       ||| ||  |  |   |||  ||       || |       || | | |    |  | | ||   ||  |  |  
GTATAGTAGCATTGG--TGCATATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGgtatgtct-tgtccatctaacacatgcatgttttcttgaccttatggtgcatgtatagttacaatgcatttgtatgcattgcaactttttttctcgagcgc