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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCAGGCATTCCGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaatattttttttttgatcggcaaggtttgctaatatttattgtactgtatcctgactcctgagtaagatgttattctggtgatagagtttggt...

Basic information

species Glycine max
transcript GLYMA09G25070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25070.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 4
TTATCAGGCATTCCGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaatattttttttttgatcg----gcaaggtttgctaatatttattgtactgtatcctgactcctgagtaagatgttattctggtgatagagtttggt
 ||  |  |  |  | |||||||| |||||||||||||| |||||||| ||||| ||||||||||||||  |  |||||||  ||     | || | || ||||     || || | |    |||||| || |  || | |        ||    || | ||    | | ||||  ||||  |
GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgctgtatttgg---agttatttcaattgagatat-gtttatt

upper sequence: GLYMA09G25070.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G009940_T02 (Zea mays), 5'ss of exon 5
TTATCAGGCATTCCGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaatattttttttttgatcggcaaggtttgctaatatttattgtac-tgtatcctgac-----tcctgagtaagatgttattctggtgatagagtttggt
 |||       |  |||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || ||  || |||||||    |  |   | |   |   ||| | |||  | |   |||| || | |||||  | ||        ||  |    ||  | | |  |  | |||      
GTATAGTAGCATTGGTGCATATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGgtatgtc--ttgtccatctaacacatgcatgttttcttgac-cttatggtgcatgtatagttacaatgcatttgtatgcattgcaactttttttctcgagcgc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720878|gb|BW662604.1|BW662604
EST:     CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAG                         GAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC
genomic: CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaat ... tggtgatcagGAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC
EST: gi|58022034|gb|CX708775.1|CX708775
EST:     CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAG                         GAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC
genomic: CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaat ... tggtgatcagGAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC