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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGgtaatgctgttgtgagtttatttctgagcaagaacttgcattgttgaatgacgggacaattttgccaacttgctttcag

Basic information

species Glycine max
transcript GLYMA09G24670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g07060.1 (Oryza sativa), 5'ss of exon 2
----------GTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGgtaatgctgt-tgtgagtttatttctgagcaagaacttgcattgttgaatg-acgggacaattttgccaacttgctttcag
          ||  | ||||||||||| ||||| || || || ||||| ||  ||||||| || |||||||| |||||||||||||||||||| |||||||  || | ||    |||   ||      ||  |    ||  || | || || |     | |||  | | |        
GGCTTTGTAGGTAAGACCAACTAGTGAGACCATCGTAAACCACATGTTCACCAAATGGATACAGAGCTACCGCGATCTTCCTCTCATGATTAACCAGgtaactctatctgcatatttgaatcaacatgagt-ccaatatcatttactgtactgatttttcttgttaccctag------

upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G107089_T02 (Zea mays), 5'ss of exon 3
GTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGgtaatgctgttgtgagtttatttctgagcaagaacttgcattgt----tgaatgacgggacaattttgccaacttgctttcag
||  | ||||| ||||| |||||||| || || ||||| ||  ||||||| || ||||| |||||||||||||||||||| || |||||||   |||||  | |||    ||        | ||| | |      | | | |||  |  |  | |      |  |   ||
GTAAGACCAACAAGTGAGACCATTGTAAACCACATGTTCACCAAATGGATTCAGAGCTATCGTGATCTTCCTCTCATGATAAACCAGgtaactttgttggcaattttaggctagctgtagagttgtagtccactattattcacgatattaaatagttcttatattcctag

upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGgta---------atgctgttgtgagt--ttatttctgagcaagaacttgcattgttgaatga--cgggacaattttgccaacttgct----ttcag
|| ||||| |||||||||||||| ||||||||||||||||| || ||||| || ||||| |||||||||||||||||||||||||||||          || |  ||||   |  || ||| |  | || | || | |||  ||| ||   | ||  |  |||  |  ||| ||    || ||
GTTCGGCCTACTAGTGAAACCATAGTGAATCATATGTTTACCCAGTGGATTCACAGCTATCGTGATCTTCCTCTCATGATTAATCAGgtctggacagacattcaattgtttatcattctttgtatgaaaaatctggtatttatgactgttcctggttatgtttttcttctttctgcgatttag

upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0050g00960.t01 (Vitis vinifera), 5'ss of exon 4
GTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGgtaatgctgttgtgagtttatttctgagcaagaacttgca--ttgttgaatgacgggacaattttgccaacttgctttcag---------------------------------------------------
|| || || || ||||||||||| || || || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||     || | |   ||| ||  |         ||| ||    | || ||       ||  ||   ||| |||  | | |                                                   
GTTCGACCTACAAGTGAAACCATAGTAAACCACATGTTCACTCAGTGGATTCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGgtg-cattgctttttcttttttcttttctttttccttacagacaggtgcattgatttgcatgttactcaaattgtctcctgttatatgatttattacctgttcaccttttgtttgtaattgatttctttcag

upper sequence: GLYMA09G24670.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S286_14V6.1 (Physcomitrella patens), 5'ss of exon 3
GTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGg----taatg----ctgttgtgagtttatttctgagcaagaacttgcattgttgaatgacgggacaattttgccaacttgctttcag------------------------------
    | || || |||||||||||||| |||||||||||| | || ||| |||| || || || |||||||||||| |||| || |||      ||||    | | || |   |   ||||   |     |||   || |   |    | | |    || | | |   |    |                               
----GACCTACCAGTGAAACCATTGTTAATCATATGTTTGCCCAGTGGGTCCAAAGTTATCGAGATCTTCCTCTCTTGATCAACCAGTGGGCCAATGTGCACAGgtgagcactcccttctagacgctttctttacttttgccagtttgagtcttcctttcgatcgaacgaataagttttgttcattcgtcacccttcattattt