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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATCAAAACAAGTTGTCCACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTTATGgtatgtctttgtgtgatcaattatgattttagttggagaaaatatatctctcttcccaaaaattctaattttagttatgtatgcatgatgactatctcccaaggttctctgttaggctgaattttgtttgaggttgatatttatttgtgtag

Basic information

species Glycine max
transcript GLYMA09G24430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24430.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g01410.1 (Oryza sativa), 5'ss of exon 7
CTTTATCAAAACAA--GTTGTCCACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTT-TATGgtatgtctttgtgtgatcaattatgattttagttggagaaaatatatctctcttcccaaaaattctaattttagttatgtatgcatgatgactatctcccaaggttctctgttaggctgaattttgtttgaggttgatatttatttgtgtag
  | || || |||     |||  | ||| | | | || |||| | | |||| |||||| ||||||| ||||| |||||||| ||||||||||| |   | | ||      ||||    |  |  |||   | | | |  |     |||  ||    |  |||||| |  || |||| ||  |||    |  | ||     ||| ||    | | ||  |  ||||    |     || ||| ||         
--TCATGAAGACAGTGACTGTGAAATATCAAGATAATGAAGTCCCCTATCTTAATGAACTGGAATATATAAACGGTGAAGTATGGGCAAATGTCTGGCAGgttagacagctgtgccccctttgctgacaattgcttgttagttgttatagcttacacgtaaaatt-tgtttgtagtaatacatgatcaaccaata-----caatgtgaattctcagtattcatttcaaatcca--tggtatatag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846250|gb|BF069179.1|BF069179
EST:     TCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTTATG                         ACTGACTGCATTGTAAGAATCTCTCCCAGTGATGGCAATGTTCTTGGATGG
genomic: TCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTTATGgtatgtcttt ... atttgtgtagACTGACTGCATTGTAAGAATCTCTCCCAGTGATGGCAATGTTCTTGGATGG