1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGAAAAGGCCACAACAGAAGATGTTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGgtcaaacctgcttttactttacggttgtgcatattcattgctaggaatattattatatatttcaagagtgctactgctgttgtatttattgtgcatatct...
species | Glycine max |
transcript | GLYMA09G23980.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAG GCATGAATGCTACCAGAAACATGATCAGGTGGTTGTGACCATATTTGCAAAEST: gi|10238957|gb|BE807845.1|BE807845
genomic: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGgtcaaacctg ... acttatgcagGCATGAATTCTACCAGAAACATGATCAGGTGGTTGTGACCATATTTGCAAA
EST: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAG GCATGAATTCTACCAGAAACATGATCAGGGTG-TTGTGACCATATNTGCANEST: gi|21993980|gb|BQ785508.1|BQ785508
genomic: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGgtcaaacctg ... acttatgcagGCATGAATTCTACCAGAAACATGATCAGG-TGGTTGTGACCATATTTGCAA
EST: GATGATCNNCTAGATAA-CCAACAGTTACAGTGACTAAACCTAAATATAT TTATGAATTCTACCAGAAACATGATCAGGTGGTTGTGACCATATTTGCAAAEST: gi|15816108|gb|BI788383.1|BI788383
genomic: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGgtcaaacctg ... acttatgcagGCATGAATTCTACCAGAAACATGATCAGGTGGTTGTGACCATATTTGCAAA
EST: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAG GCATGAATTCTACCAGAAACATGAT
genomic: GATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGgtcaaacctg ... acttatgcagGCATGAATTCTACCAGAAACATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAAAGGCCACAACAGAAGATGTTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGgtcaaacctgcttttactttacggttgtgcatattcattgctaggaatattattatatatttcaagagtgctactgctgttgtatttattgtgcatatct
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