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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATGGTAGTGGATGTGTTTCCATCTATGGACTCAAGTTTGATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgtttgctatttctacctgttattttgggtaatatgaaaataggcactgttaatggaatgatcacacaaggataaatatgtaccagtatggtatt...

Basic information

species Glycine max
transcript GLYMA09G11960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G11960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 3
GGAGATGGTAGTGGATGTGTTTCCATCTATGGACTCAAGTTTGATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgtttgctatttctacctgttattttgggtaatatgaaaataggcactgttaatggaatgatca-cacaaggat---aaatatgtaccagtatggtatt---
|| |||||||||||||| |||||||||||||||  |||||| || |||||||| ||||  || ||||||||||||||||| ||  ||||||||||||   |||  |  |||  | ||||  ||       | ||    ||     | || |   ||   ||| ||    |||   | || | |  ||  ||   | |   
GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt-ttccttcctcatgttgcttc------tttgttggtactttttcttcaaataaatttcagcaattagattccagatttatttcatgatttaactatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719223|gb|AW306870.1|AW306870
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|151409781|gb|EV279589.1|EV279589
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|192325817|gb|FK018039.1|FK018039
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|298167097|gb|HO010536.1|HO010536
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|15286510|gb|BI470401.1|BI470401
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|298172912|gb|HO019896.1|HO019896
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTAGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|193693132|gb|FK633737.1|FK633737
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|15814116|gb|BI786391.1|BI786391
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|192320580|gb|FK011990.1|FK011990
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|298182560|gb|HO031295.1|HO031295
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCCGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|17023477|gb|BM094511.1|BM094511
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|208125827|gb|GD922033.1|GD922033
EST:     GATAGAAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: GAT-G-AAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|298188736|gb|HO035429.1|HO035429
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: gi|10847406|gb|BF070093.1|BF070093
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG