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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGgtatgcattgtatgagtaagttgagctattgcttatttggtatgactacagtcttcttttcaaaatctgattgttaaaattaagtataccttatacgtat...

Basic information

species Glycine max
transcript GLYMA09G10390.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G432083_T01 (Zea mays), 5'ss of exon 3
TGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGgtatgc--attgtatgagtaagttgagctattgcttat--ttggtatgactacagtcttcttttcaaaatctgattgttaaaattaagtataccttatacgtat
 ||  || |  || || |  || | ||||| || |||||  | || |||||  | || || |||||||| ||||| |||||||| |||||||| ||||||||||||  | | | ||   ||  |  |  | | ||||    |||  ||   ||  | ||  ||      | || || || | |  |  | |    || |     
AGGTGTATGGCAGTCACTTGTGTTGGTTTCATTTTGTGGTGCATGCACATTTTTGACCTCGATATCATTAAGTGCCATTGCAACGAATGGAGCTATGAAGgtatgctaaatatttgcacaatatttgacaattcttagggctggattgttcacccttttgattgtcttctttgctt-ttcataccatttgtgggatacaga---

upper sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 5
TGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGgtatgcattgtatgagtaagttgagctattgcttatttgg-tatgactacagtcttcttttcaaaa-------tctgattgttaaaattaagtataccttatacgtat----------------------------------------------------------------------------------------
||| || ||| |     |  |  | || | | | ||||||   ||||||||| | ||  ||||||| ||||||||||||||||| ||||| || |||||||||    || | |  || |  | | |||    || ||||  ||  ||||        |  | |||        ||    | ||     |  |  |  ||  | | ||                                                                                         
TGGTATCGGACAAGGCCTAGTATTGGTATTTCTTTGTGGCTTATGTACATTCTTGACGACAATATCTTTGAGTGCTATTGCAACAAATGGTGCAATGAAGgtaattcttttttctgttatatcacctaaattttctttgaataaaactatgtaaccataattaaagatattcctccctctcttgggtctctgcctctctggtccataattgacaccccttattacttttctatttcttttgtgattgaacggtatttaagacatcaagtttattaataacttttgggttatctcag

upper sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 5'ss of exon 5
TGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGgtatgcattgtatgagtaagttgagctattgcttatttggtatgactacagtcttcttttcaaaatctgattg----ttaaaattaagtataccttatacgtat
 ||||| ||  || |  |  |||| || || || |||||    ||||| ||||| ||||| ||||||||||||||||| ||||| ||||| || |||||||||  |    |         || ||| | |  | |||   |||||  |   ||||  | | |  || |  ||     |||| |  |   |   ||| |      
AGGCATTGGTCAGTCGCTTTTGCTGGTGTCCTTTTGTGGTTTGTGTACTTTCCTGACTTCGATATCATTGAGTGCTATCGCAACTAATGGTGCAATGAAGgtagactggattctttattcttaagccacta-tcattgcttatgag-atgatctttctgtgattattttcttaagccttaataagagaaaaggcttgtttac--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208140500|gb|GD938650.1|GD938650
EST:     TCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAG                         GGTGGGGGACCTTACTATCTCATAGGCCGTGCCCTTGGTCCTGAAGTTGGA
genomic: TCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGgtatgcattg ... tgttctgtagGGTGGGGGACCTTACTATCTCATAGGCCGTGCCCTTGGTCCTGAAGTTGGA