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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta...

Basic information

species Glycine max
transcript GLYMA09G08830.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 3
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgc-----aatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta--
| |||||| ||| | ||  |||| ||  | || ||||| || ||||||   |||||| ||||||||||||| |||||||| |||||||| || |||||||||      | | | |     | ||   || ||| ||||||      | | |||  |  || ||  | ||     |    |    |  || |      |  | |    
AGTATTCTTGGACTGGAAGCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGACTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcatttgtaacactataataaattattaatgttgctcaatgaagaaaaaatatatcttacctggtgaactcttcttacgccttttctcccacacatacccag

upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G167868_T01 (Zea mays), 5'ss of exon 3
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgt--tgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta
| |||||| ||| | ||  |||| ||  | || ||||| || ||||||   |||||| | ||||||||||| |||||||| |||||||| || |||||||||        |||  || |    || || | || | ||  | ||   | |  |      | |     |  |  |||| || |    |||||   |       
AGTATTCTTGGACTGGAATCTGGGGCATCTGAATCTGATATCAAGAAATCATATAGGAGGCTTTCTATTCAGTACCATCCTGATAAAAATCCTGATCCAGgtacctcttttgtaacattataataattctgttcaatgaagaaaaaaatatatcttacctggtgaacacttatgatttct-ctcccgcctacacag------

upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G21180.1 (Arabidopsis thaliana), 5'ss of exon 4
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctacaattgcctatgtaactgcta-----------
  ||| || || || || ||||| ||  |||| || ||||| ||||||   |||||  |||| ||||||||||||||||| |||||||| || ||||||||| |||    || | | |  |  |  ||  | || |||  | | |   | ||    |     |  ||||    ||| ||  ||||| ||| |   |  |            
GGTATACTCGGTTTGGAACCTGGTGCTTCAGATTCAGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGgtcgaaatgcttcctggtcctcttccttgataatcgtt-tatttcctcccttttgatacattgttatgt---gttcttagtattgcttatttgtgtattgtaatggtacag

upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G79940.3 (Arabidopsis thaliana), 5'ss of exon 4
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtt-tatttttttttattgttg--caatgcaaactttgatgtttgcagg----aatgttggattcctacaattgcctatgtaactgcta----------
| ||| || ||| | || |||||||   |||| || ||||||||||||   |||||  | || || |||||||||||||| |||||||| ||||||||||||  ||| | || |  ||||| | ||||||||   | |||  || | |  | ||  ||| ||||||      ||  ||      |    ||   |  | |  || |           
AGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAGCATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGgtc-aagtttttccccttgttattttttttttcccttttgatcattacggaatt--atggttgcagcttttgatcctgatagttttttcttctatgcgcatttgttgatctctacag

upper sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 3
AATATTCTAGGATTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtgtttcagttgtttatttttttttattgttgcaatgcaaactttgatgtttgcaggaatgttggattcctac-aattgcctatgta-actgcta-----------------------------------------------
|  ||||| ||||||||  |||||||  |||| || |||||||||||    || ||| |||| || |||||||||||||| |||||||| || ||||||||||||    |||  |||| || | ||  | |   |     | |   | ||||||| || ||| | |    |  ||| |   |||   || |||  |||   |                                               
AGCATTCTTGGATTAGAATCTGGAGCTTCAGATTCAGAAATAAAGAAGGCATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgag---gttctagttcttcagttaatatgtgttccttagtttta-ctttgat-ttagcaagtactgcgtcttcttttgaatcatctgtgtttactatcaatttctttttgcatttatttatttatctttttttttttgttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590846|gb|FK548191.1|FK548191
EST:     GTNTAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAG                         AGGCACACAAGTACTTCGTTG
genomic: GTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtg ... tttattttagAGGCACACAAGTACTTCGTTG
EST: gi|193499753|gb|FK462206.1|FK462206
EST:     TATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAAGATCCAG                         AGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTT
genomic: TATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCC-AGATCCAGgttgaaggtg ... tttattttagAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTT
EST: gi|193702686|gb|FK638726.1|FK638726
EST:     GTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAG                         AGGCACACAAGTACTTCGTTG
genomic: GTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtg ... tttattttagAGGCACACAAGTACTTCGTTG