1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTCAAAGAAGTGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaaaatttacaattaaggaattcttgccaataaaggaacatacatttttttttacactttttactcctatttttggtttggcgatttgaagctgaatctactggattacttcatag
species | Glycine max |
transcript | GLYMA09G08190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATATCAAATGCTGCTGCTGCCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGEST: gi|151411952|gb|EV281763.1|EV281763
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTG
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|151406212|gb|EV276027.1|EV276027
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|192316660|gb|FK008253.1|FK008253
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|151409355|gb|EV279163.1|EV279163
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|192325814|gb|FK018036.1|FK018036
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|192316659|gb|FK008252.1|FK008252
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|192308219|gb|FK000855.1|FK000855
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATEST: gi|192321693|gb|FK014037.1|FK014037
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
EST: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAA GTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
genomic: TGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaa ... tacttcatagGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTCAAAGAAGTGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAgtatatctaaaatttacaattaaggaattcttgccaataaaggaacatacatttttttttacactttttactcctatttttggtttggcgatttgaagctgaatctactggattacttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG