Sequence
atgc intronic sequence ATGC exonic sequenceATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgctttttaattcatattctttttgttaattttataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat...
Basic information
species | Glycine max |
transcript | GLYMA09G07530.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G07530.3 (Glycine max), 5'ss of exon 4
lower sequence: AT1G54270.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgt--gctttttaattcatattctttttgttaattttataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat
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TTTTGACATGCTTAGAAGACAATCTCTCCGCCCTGACTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGATCAGgtttgttatcttcttcaaagtttgaatctaccctctgtggtta-tctctga---tattgacttggttttgtgttgtt------ttctggtgaatttgcag--
upper sequence: GLYMA09G07530.3 (Glycine max), 5'ss of exon 4
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgctttttaattcatattctttttgttaattttataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat
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CTTTGACATGTTGAAGAGGCAGTCTCTTCGTGCTGACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgt--------atgcaaatatttctc---agtgtttcaatt-----ccattctcgttatagttta-acttgaatctcactggtttctgggttttttcag--
upper sequence: GLYMA09G07530.3 (Glycine max), 5'ss of exon 4
lower sequence: AT1G72730.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgctttttaattcatattctttttgttaattt--tataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat
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CTTTGACTTGTTACGCAGACAATCCCTCCGTGCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGgtttaatcttgtttaatctcccattcacattttctttttctctctgataaaatcaagtcatttgttcttataatttg---atttctctgtcag---------
upper sequence: GLYMA09G07530.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgctttttaattcata---ttctttttgttaattttataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat
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ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttg-tggcaaaatttccatcaactgcaatattcttttgaca-gtatgagtatatg-atgcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193661034|gb|FK600868.1|FK600868EST: TTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAG ACCTATGATATATTCCAGTTGCTTCCATCTAAGATTCAAGTGGGAGCTTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgcttttta ... tttttatcagATCTATGATATATTCCAGTTGCTTCCATCTAAGATTCAAGTGGGAGTTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgctttttaattcatattctttttgttaattttataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccacac