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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGAAACAAGTAACAGAACTAGACAAGAGATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggtttcacattgctatgttgctttcaccatttcattgatttttgacactgttcaatggattgattatctattctgtcactttacacactcctact...

Basic information

species Glycine max
transcript GLYMA09G06650.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322515|gb|FK014636.1|FK014636
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCC-TTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTG
EST: gi|26057707|gb|CA800621.1|CA800621
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
EST: gi|7924614|gb|AW830640.1|AW830640
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
EST: gi|209726446|gb|BW662811.1|BW662811
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
EST: gi|254325977|gb|GR838858.1|GR838858
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
EST: gi|192296179|gb|FG991549.1|FG991549
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCTTCAGTCCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
EST: gi|192327541|gb|FK020616.1|FK020616
EST:     ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCA                         ATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG
genomic: ATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggttt ... ttttgtacagATTTATTTTCCCTTCAGTTCCCATTGGTTCTGGTAGTGATCTTGTTCCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAGAAACAAGTAACAGAACTAGACAAGAGATACCTGATCCTGTTGCTGGATTTGGTGAACCTGGTGGTCCTCCAACGCAgtaagggtttcacattgctatgttgctttcaccatttcattgatttttgacactgttcaatggattgattatctattctgtcactttacacactcctact

- - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG