Sequence
atgc intronic sequence ATGC exonic sequenceACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGTCTGAGGTTACAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGgttggtgttcatgactttattttctgttgtgatgtatcacatttctcttgttctctttctttctattctgcttttggcggggatgaatgctagcagtgat...
Basic information
species | Glycine max |
transcript | GLYMA09G05820.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06430.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGTCTGAGGTTACAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGgttggtgttcatgactttattttctgttgtgatgtatcacatttctcttgttctctttctttctattctgcttttggcgggg-atgaatgctagcagtgat
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ACTCGGTGGTAGAGCTGCCGAAGAAGTCATCTTTGGTGAGTCTGAGGTGACTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttc-----tacactcccagcttcagtat------ttttttctgttatcctaaactagtgaatgaacttgacagtatatcatcatttacttgcag
upper sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 4
ACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGTCTGAGGTTACAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGgttggtgttcatgactttattttctgttgtgatgtatcacatttctcttgttctctttctttcta--ttctgcttttggcggggatgaatgctagcagtgat
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ACTCGGTGGCAGAGCTGCTGAAGAAGTGATCTTTGGTGAGCCTGAGGTGACAACAGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCCAAACAGgtaataaacagttcctccatctgct--tccagctggtaacatttaaactgcaaatgtcattgtcagtttctattctcaacatatacaaaacacagtaccaccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11687680|gb|BF595356.1|BF595356EST: CAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAG CAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCGTG
genomic: CAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGgttggtgttc ... gatactctagCAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGTCTGAGGTTACAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGgttggtgttcatgactttattttctgttgtgatgtatcacatttctcttgttctctttctttctattctgcttttggcggggatgaatgctagcagtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG