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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacaatctcttctaagttcatttcataataagatataaccaatttgcttggttgttttcacttttcatgataaatacatacattaccaatgtatcaccctttgttttaactattgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag

Basic information

species Glycine max
transcript GLYMA09G05510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G05510.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G807767_T03 (Zea mays), 5'ss of exon 3
GATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacaatctcttctaagttcatttcataataagatataaccaatttgcttggttgttttcactt-ttcatgataaatacatacattaccaatgtatcaccctttgttttaactattgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag
|||| | || ||||   | |||   || ||||||||||||||||| || |||||  | |  ||||| ||||||||| ||||| | |||||| |||||||||||  |   |||   |||   ||  || ||    |||| | |||  || |  |    |    |||||  ||  |  | |||    |    |  | |  ||  |  | |                                                                                 
GATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtg-gatcaaatct---tttgttgca----aagagaaaactgatctcttaaaattccgtcactagtttctattgaatgttcagcgaattagttaatagctttgt---------------------------------------------------------------------------------

upper sequence: GLYMA09G05510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01080.t01 (Vitis vinifera), 5'ss of exon 4
GATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacaatctcttctaagttcatttcataataagat-ataaccaatttgcttggttgttttcacttttcatgataaatacatacattaccaatgtatcaccctttgttttaactattgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag
||||||||| ||||| || ||||||||||||||||||||||| || ||  | ||  |||  ||||| ||||||||||||||||||||||| ||||| |||||||||     | ||||| |  |  | | | || | | | || || || |    | ||| |  ||| | ||  |||| |     ||  || |     |  | |  ||                                                                                  
GATGTTAACAATAAGAAAAAAGCTCCCATGGATGTTTTTCCCAGACATCGTACCAGTGGGACATCCTATATTTGATATTATCAACTCAACCAATCCGGAGgtaattgtg--cccttctta--ttgtctgaaaaaatgcttattactaactga--tagttttgatcaatgtt--tgattagagggtatctttctgtctttcctcttttc---------------------------------------------------------------------------------