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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTTTCTCGTTTCTTTCACTACTTGGACCGCTACTTTATTGCTCGAAGGTCACTTCCGCCACTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGgtaattttactatataccttaaatggtgtagtattacaaatttacagctgaaccatagataatgctatgtcaattttttttaatagttattcttgttcat...

Basic information

species Glycine max
transcript GLYMA09G05180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G05180.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g01320.t01 (Vitis vinifera), 5'ss of exon 3
GTGGCTTTCTCGTTTCTTTCACTACTTGGACCGCTACTTTATTGCTCGAAGGTCACTTCCGCCACTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGgtaatttt--actatataccttaaatggtgtagtattacaaatt-tacagctgaaccatagataatgctatgtcaattttttttaatagttattcttgttcat-------------------------------------------------------------------------------------------
 ||||||||||||||||| || ||  | ||  | || ||||||||||| |||||||||||  | ||||| || |||||| | ||||||||||||||| |||||  | |  ||| ||| ||||   ||   |   ||   |  |  || |  ||    | ||| | |    |         |||||| |  | |  ||| |                                                                                              
ATGGCTTTCTCGTTTCTTCCATTATCTTGATAGATATTTTATTGCTCGGAGGTCACTTCCTGCCCTTAACGAGGTTGGGCTCACTTGCTTCCGTGATCTGgtatgtcttgactgtat-ccttttctgtcatgccatcttatttcctatatttgttataaagaaactctctttctttgcacttttaacaactgtggttgcttggagtgaaaaatgctatgttattgtttttttccacaaccacttttggccttatatgaactgaaacatcactggcatttctattctggtaacag

upper sequence: GLYMA09G05180.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ12300 (Selaginella moellendorffii), 5'ss of exon 3
GTGGCTTTCTCGTTTCTTTCACTACTTGGACCGCTACTTTATTGCTCGAAGGTCACTTCCGCCACTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGgtaattttactatataccttaaatggtgtagtattacaaatttacagctgaaccatagataatgctatgtcaattttttttaatagttattcttgttcat
 ||||| ||||| |||||| ||||||||||||||||||| |||||| || | || |||||  | ||   |||||||||  | |  || ||  | || |||||   | | || | |   || |   |  | |  ||||   |      | |                                                  
ATGGCTCTCTCGCTTCTTTAACTACTTGGACCGCTACTTCATTGCTAGACGCTCGCTTCCAGCCCTCGGTGAAGTTGGACTAATGTGTTTTAGGGACTTGgttggtattctctttcgtttgagctgctttggcttaccgctcgcttacag--------------------------------------------------

upper sequence: GLYMA09G05180.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ25647 (Selaginella moellendorffii), 5'ss of exon 3
GTGGCTTTCTCGTTTCTTTCACTACTTGGACCGCTACTTTATTGCTCGAAGGTCACTTCCGCCACTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGgtaattttactatataccttaaatggtgtag---tattacaaatttacagctgaaccatagataatgctatgtcaattttttttaatagttattcttgttcat
 ||||| ||||| |||||| ||||||||||||||||||| |||||| || | || |||||  | ||   |||||||||  | |  || ||  | || |||||   | | || | |   || |   |  | |   |||  |    ||||||                                                     
ATGGCTCTCTCGCTTCTTTAACTACTTGGACCGCTACTTCATTGCTAGACGCTCGCTTCCAGCCCTCGGTGAAGTTGGACTAATGTGTTTTAGGGACTTGgttggtattctctttcgtttgagctgctttggcttatcgctcgcttacag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209705718|gb|BW656711.1|BW656711
EST:     GGTCACTTCCGCCACTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTG                         GTTTACAAGGAATTAAACGGGAAAGTGAGAGATGCAGTGATTTCCCTT
genomic: GGTCACTTCCGCCACTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGgtaattttac ... atatttccagGTTTACAAGGAACTAAACGGGAAAGTGAGAGATGCAGTGATTTCCCTT