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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagtttttaggtctagattattgctttataattgattgaatggggtgatacttgaaggcattatgcttggctattttaaagtttcttaacaacttcac...

Basic information

species Glycine max
transcript GLYMA09G02490.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 3
GATGACACTGCTTTTGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagtttttaggtctagattattgctttataattgattgaatggggtgatacttgaaggcattatgcttggctattttaaagtttcttaacaacttcac-
||||| ||||| ||||||||||| |||||  | |||||||||||||||||||| ||||| ||||||||||||| |||||| || |    ||| | |   | | | ||  |   |       ||| |||     | ||| ||  ||   |       |         |   | 
GATGATACTGCATTTGAGAAACAAAGTGCCTTGTTTGCTTTGGCAATATCAGACATTGTGCTGATAAACATgtgagtttt-agtttagcattctagtgcttttaatgcctttttctttccttacatgataagttgatggttatctgcatctcgtgctagctgtggttgatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023193|gb|BM094227.1|BM094227
EST:     CAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT                         GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAA
genomic: CAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagttttt ... ttattcacagGTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAA
EST: gi|209698106|gb|BW661049.1|BW661049
EST:     CAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT                         GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAA
genomic: CAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagttttt ... ttattcacagGTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAA