Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttgtgaggctacatgtttactatacgattaattaatttgagcacttgtgtatcttctttcaagtctaaagactaattcagtgtacttgcatggtatag
Basic information
species | Glycine max |
transcript | GLYMA09G01050.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 4
GGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagt-tttgtgaggctac------atgtttact--atacgattaattaattt---gagcacttgtgtatcttctt-tcaagtctaaagactaattcagtgtacttgcatggtatag-------------
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GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatctttgcgcttttatgtgcaaatgcttatttaatccctttatctgcctttcagggtatttggctattttgttgcctagtttcactagcattttcttat-tttaaattctgtcatgtatttgagcag
upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 4
GGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttgtgaggcta--catgtttactatacgattaattaatttgagcacttgtgtatcttctttcaagtctaaagactaattcagtgtacttgcatggtatag---------------
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GGTGGATTTGATATGATCTGCAGTGGAAGGGACAAGATTGAAACACCGGAGCAGgtatgtctctgggctctggccatgttta-tgttcaaatgcttatgaaaaaactttgttactggatttcctaatctc--gatcattttttctcaactacctaatacctgtgttggttgtgcag
upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttgtgaggctacatgtttactatacgattaattaatttgagcacttgtgtatcttctttcaagtctaaagactaattcagtgtacttgcatggtatag
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GGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCAGgt-agaaatgtttttcttaatgttttgtatggcgcgcattgat----gcttttatcgatggactt---agtt--atattcagtttggtacattt-tgtag-----
upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttgtgaggctacatgtttactatacgattaattaatt-tgagcacttgtgtatcttctttcaagtctaaagactaattcagtgtacttgcatggtatag
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GGTGGTTTTGACATGATCTGCAGTGGAAGAGACAAGATTGAAACACCTGACCAGgt--------tgaa--tatttttttgtggtttgaaaagatatttgttactgcttccaaagcctctatttcgtgcagtgagtaattatatatgcctctcatgtgcag
upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttgtgaggctacatgtttactatacgattaattaatttgagcacttgtgtatcttctttcaagtctaaagactaattcagtgtacttgcatggtatag
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GGTGGTTTTGATATGATCTGCAGTGGGAGAGACAAGATTGAAACTCCAGAACAGgtgagatacac-actcaatacatgta-tatggttcttgtggatttgtttttcatcatttattttctgagttttaatggacttttcag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5342441|gb|AI794725.1|AI794725EST: GCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAG TTTAAGCAAGCGGAA
genomic: GCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttg ... catggtatagTTTAAGCAAGCGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGgtgagttttgtgaggctacatgtttactatacgattaattaatttgagcacttgtgtatcttctttcaagtctaaagactaattcagtgtacttgcatggtatag
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG