1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAAgtgagcgattttcttatgctatttcgtcccttttgattagtttcctggtctggtgattttgttttgctgcctgaagggttttatttgggggtgggtgggg...
species | Glycine max |
transcript | GLYMA09G00630.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGATATTGATAAGAAAAA ATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTATATGTTGTCCGEST: gi|208259720|gb|GE059750.1|GE059750
genomic: ATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAAgtgagcgatt ... gatgatgtagATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTATATGTTGTCCG
EST: ATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGATATTGATAAGAAAAA ATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTATATGTTGTCCGEST: gi|33389770|gb|CA852977.1|CA852977
genomic: ATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAAgtgagcgatt ... gatgatgtagATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTATATGTTGTCCG
EST: ATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGATATTGATAAGAAAAA ATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTATATGTTGTCCG
genomic: ATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAAgtgagcgatt ... gatgatgtagATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTATATGTTGTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCTGACATTGATAAGAAAAAgtgagcgattttcttatgctatttcgtcccttttgattagtttcctggtctggtgattttgttttgctgcctgaagggttttatttgggggtgggtgggg
- - - GTGGAG
- - - TGGAGA
- - - - GGAGAA
- - - - - - AAGCTG
- - - - - - - AGCTGA
- - - - - - - - - AAAGAA
- - - - - - - - - - AAGAAG
- - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - AAGAAA