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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttactattttttttgcttctacgcttattataattattaagtaactacactctgcattattcactactatg...

Basic information

species Glycine max
transcript GLYMA08G46570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g30800.2 (Oryza sativa), 5'ss of exon 4
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttactattttttttgcttctacgcttattataattattaagtaactacactctgcattattcactactatg
 |||||| ||| | ||||||| |||||||||  ||| |||||||| |||||||| |||| ||| |||||||||||||||          |||| ||| |   ||    ||||  |||  |  ||     |||   |  | |    ||| |   | ||  |  |||   |  |  
CGCATACCGAGCATTATACATCCTCAACTGGGCCTACCGCTACTTCACTGAGCCACACTATGTGCATTGGATAAgtatgtcatatctagattgcgttattctgt----atttaatttaata-tatatgcattgggagcaatctacaacaat-ttatgtgtgtttcttaaacag-

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g28340.1 (Oryza sativa), 5'ss of exon 4
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttactattttttttgcttctacgcttattataattattaagtaactacactctgcattattcactactatg
||||||| | |  || || || || ||||||||||| || ||||| ||||||||||| || || |||||||||||||||   |||  | ||  |   ||    || ||  |  || || |   | | |  || ||| | |||  ||         ||||               
TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGAGCCCCATTTCGTTCATTGGATAAgtatgga-ctccatcatcttacctttccatttctcatggttatggtgg-atgatcttt-taactgttatatatacttttgttgcag--------------

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G031802_T01 (Zea mays), 5'ss of exon 2
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttact---attttttttgcttctacgcttattataattattaagtaactacactctgcattat--------tcactactatg------------------------------------
||| ||| | |  || || || || |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||| |  ||  |    |   || |  || ||   || |  || |   |  | | |  | | ||||  |  |   | |||||  ||||||        | ||   |||                                     
TGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaa-agatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccag

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttactattttttttgcttctacgcttattataattattaagtaactacactctgcattattcactacta-tg
 |  ||| | ||| ||||||| |||||||||||||| || ||||| |||||||| |||||||| || |||||||||||| | ||||||   | |      |   |     | | |||  ||     || |||   |||| |   |  | ||  |    | |  | ||||  | ||
GGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAAgtatgttcctctctctctctcaaccttcactgagcatctgtttattttcctcctaattg-gattagtttttgtcaactattgcaacttatgactaaaaatg

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 5
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttactattttttttgcttctacgcttat---tataattattaagtaactacactctgcat-tattcactac---tatg--------------------
||||||  |||   | || ||| | || ||||| || ||||||||||| ||||| |||| |||||||||||| ||||||| |||||||   | | | |     |  || |  | |     | || ||  |    |  |  |||| |     |  |   ||||| |   |||  |   ||||                    
TGCATATCGAGCCTTGTATATTTTAAATTGGATTTACCGCTACTTTACGGAGCCACACTATGTCCATTGGATCAgtatgactctctctctctctctctctctctctctctcatatgcatatgtatgcacaggcatgcacatattcatgtctttaatcatgcatgtcaacacctcatttatgcaataattctacttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306206|gb|FG996834.1|FG996834
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAA-CACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|6566143|gb|AW233782.1|AW233782
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|209715073|gb|BW677116.1|BW677116
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|193314107|gb|FK281742.1|FK281742
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|9564202|gb|BE473711.1|BE473711
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|31305448|gb|CD390651.1|CD390651
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|10252890|gb|BE820656.1|BE820656
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|192325724|gb|FK015081.1|FK015081
EST:     CAACTGGATCTATCGCTACTTTACTGAGCTCCACTTTGTCCATTGGA-AA                         CATGGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTAT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGG-ATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTAT
EST: gi|21601718|gb|BQ612049.1|BQ612049
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|192306207|gb|FG996835.1|FG996835
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|27424798|gb|CA936318.1|CA936318
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|208059246|gb|GD859474.1|GD859474
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATG
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATG
EST: gi|208113393|gb|GD911578.1|GD911578
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|7147282|gb|AW509204.1|AW509204
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCACACTTTGTCCATTGGATAA                         CATGGATGTCTGGCCTTGGTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|8401987|gb|BE057621.1|BE057621
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
EST: gi|193612727|gb|FK560462.1|FK560462
EST:     CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAA                         CATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT
genomic: CAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattct ... ttttttgcagCATGGATTTCTGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATT