Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGgtgtgaactgaacttattgagtatttcttgaatatgcacaattcatctcttttgtgtttataatatgttacatcttaatgttggaagggtgggaggaggg...

Basic information

species Glycine max
transcript GLYMA08G46170.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813589|gb|BQ298067.1|BQ298067
EST:     ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAG                         GGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAG
genomic: ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGgtgtgaactg ... aatctttcagGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAG
EST: gi|6566336|gb|AW234009.1|AW234009
EST:     ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAG                         GGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAG
genomic: ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGgtgtgaactg ... aatctttcagGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAG
EST: gi|16997247|gb|BM086619.1|BM086619
EST:     ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAG                         GGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAG
genomic: ATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGgtgtgaactg ... aatctttcagGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAG