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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGTCAAAGTTAGGCTTCAAGCTGAAGGTCAATTGCCAACTGGGGTACCTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAgtaagcctttcttatagttattttggtcttgttcctctctatttgttgaaaatatactaatcaagtccaattctctctatatttttttgttaaactag

Basic information

species Glycine max
transcript GLYMA08G45130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g05940.t01 (Vitis vinifera), 5'ss of exon 4
TCTAGTCAAAGTTAGGCTTCAAGCTGAAGGTCAATTGCCAACTGGGGTACCTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAgtaagcctttcttatagttattt-tggtcttgttcctctctatttgttgaaaatatactaatcaagtccaattctctctatatttttttgttaaactag
||| || |||||| ||||||||||||||||  |||||||| ||||||| || | ||||||  |||| ||| | ||||| ||||  || ||| ||||||| || |   ||    |  |  || | | |  |   |  | ||    ||||  ||||  | |    ||    |                             
TCTTGTAAAAGTTCGGCTTCAAGCTGAAGGAAAATTGCCACCTGGGGTTCCAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttctaaaatgcaatgtgtcgattaaattttttcatcatgttctaaattcatttgg-aaacatag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302624|gb|FG996332.1|FG996332
EST:     CTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAA                         GAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAAT
genomic: CTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAgtaagccttt ... gttaaactagGAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAAT
EST: gi|192325751|gb|FK017973.1|FK017973
EST:     CTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAA                         GAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAAT
genomic: CTAAGCGTTATTCTGGTGCTATAGATGCATATTTAACTATACTGAGACAAgtaagccttt ... gttaaactagGAAGGGATAGGGGCCTTGTGGACAGGTCTTGGGGCCAATATAGCAAGGAAT