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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCACTTGCTAACTTTTTCGGCATTACTGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaatagaaagctaaaatttgtactaacttcatgcacattggtgcactaaagtttaatatgatgatgatgataattattgttaattgatagtttgc...

Basic information

species Glycine max
transcript GLYMA08G43590.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208110921|gb|GD914071.1|GD914071
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|193446819|gb|FK411782.1|FK411782
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|207691950|gb|GD673867.1|GD673867
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|208208007|gb|GE003000.1|GE003000
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|208257736|gb|GE055331.1|GE055331
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|193535466|gb|FK492136.1|FK492136
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|208067987|gb|GD861833.1|GD861833
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|193358257|gb|FK322797.1|FK322797
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|207685440|gb|GD668170.1|GD668170
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|207765682|gb|GD735927.1|GD735927
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|207780476|gb|GD751697.1|GD751697
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|208316178|gb|GE117418.1|GE117418
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|208150564|gb|GD949447.1|GD949447
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|193373866|gb|FK341156.1|FK341156
EST:     CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: gi|208173943|gb|GD966826.1|GD966826
EST:     GAGGTTACTAGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG                         GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: GAGGTT-CT-GAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGCACTTGCTAACTTTTTCGGCATTACTGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaatagaaagctaaaatttgtactaacttcatgcacattggtgcactaaagtttaatatgatgatgatgataattattgttaattgatagtttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaaa