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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttctggatgttatatccttttaacagattctatcctttgaataactcgtcaatgaatttcacttaatttgcag

Basic information

species Glycine max
transcript GLYMA08G42300.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193424007|gb|FK386328.1|FK386328
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|207694669|gb|GD676528.1|GD676528
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|6665849|gb|AW277299.1|AW277299
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|298164275|gb|HO013920.1|HO013920
EST:     GAGTCATCCAAATTGAGGAGACAAATTCGGGATATTCAGAATCTAAACAG                         TCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|17020848|gb|BM091882.1|BM091882
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|8285076|gb|BE022635.1|BE022635
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|193359674|gb|FK323758.1|FK323758
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|193362757|gb|FK324405.1|FK324405
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAAGA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAA-GA
EST: gi|298181403|gb|HO022842.1|HO022842
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|6666384|gb|AW277843.1|AW277843
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|193662744|gb|FK604008.1|FK604008
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|193716892|gb|FK654660.1|FK654660
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|9985912|gb|BE659918.1|BE659918
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|193632718|gb|FK580566.1|FK580566
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|298186356|gb|HO036989.1|HO036989
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|298187885|gb|HO031842.1|HO031842
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|298198572|gb|HO040111.1|HO040111
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|298181551|gb|HO025726.1|HO025726
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|193437618|gb|FK399131.1|FK399131
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|6454914|gb|AW185524.1|AW185524
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: gi|208212735|gb|GE013208.1|GE013208
EST:     GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA