Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGgtaatatatgctaacatatctgatgattttaaatgtattttctttggcctccactcaaagtttatctagtgcttggagtagttgtaacttttgtattaaaattgcag

Basic information

species Glycine max
transcript GLYMA08G42230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42230.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 6
AGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGgtaatatatgctaacatatctgatga---ttttaa--atgtattttctttgg-----cctccactcaaagt--ttatctagtgcttggagtagttgtaactttt---gtattaaaattgcag
 || ||||| ||||| || ||||| ||||| ||||| ||| |||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||   ||    |  |   | | ||     |||||   || |||||| | | |     |||| ||| |   |  || | |    | ||    | |||| | ||||   ||||  ||| |||||
GGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGgtgtaattctttttcccttttaatagctgttttatttatttattttttctagtcattcctctacttatcatccttttttctaacctgtttgacttgtgaattttcttgtatgcaaaatgcag