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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaaaactaccctgctattccactttggagctaacaatcatgtgaaatatttgtacaatcattttttttgtacaatcaatacctgagggttatc...

Basic information

species Glycine max
transcript GLYMA08G40860.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40860.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 4
GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaaaactaccctgctattccactttggagctaacaatcatgtgaaatatttgta--caatcattttttttgta-caatcaatacctgagggttatc
||||||| ||| |||||||||||||||| || ||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||||||| ||          ||||||| ||  |   | |        ||  |      |  ||  |    || | | ||| |||  || |    | |    |  || |
GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACAgtaagcctc---tctccctgctgtttaatacttgcctgtggcatggttcctgtttcttacaagttataagtatttatgtggcatttcggaacaatagtctaac

upper sequence: GLYMA08G40860.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110983_T04 (Zea mays), 5'ss of exon 4
GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaaaactaccctgctattccactttggagctaacaatcatgtgaaatatttgtacaatcattttttt-tgtacaatcaatacctgagggttatc
||||||||||| |||| || |||||||  || || ||||| || |||||||| |||||||| ||||||||| | ||||| |||||||||||| |||        | ||   | | | |  ||| |   |  ||| |  |||  |  || |    ||  | |  | |      | |    |  | |  | | 
GTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACAgtaagttgtttctcatccatatttacaagattgca-taagaaataagttgatctgattttgtcttcgctgtgatgtactttttaagattccaaagcatgtt

upper sequence: GLYMA08G40860.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110983_T03 (Zea mays), 5'ss of exon 2
----------GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaaaactaccctgctattccactttggagctaacaatcatgtgaaatatttgtacaatcattttttt-tgtacaatcaatacctgagggttatc
          ||||||||||| |||| || |||||||  || || ||||| || |||||||| |||||||| ||||||||| | ||||| |||||||||||| |||        | ||   | | | |  ||| |   |  ||| |  |||  |  || |    ||  | |  | |      | |    |  | |  | | 
TTATTCTCAGGTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACAgtaagttgtttctcatccatatttacaagattgca-taagaaataagttgatctgattttgtcttcgctgtgatgtactttttaagattccaaagcatgtt

upper sequence: GLYMA08G40860.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 5'ss of exon 5
GTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagt---acaaaactaccctgctattccact-ttggagctaacaatcatgtgaaatatttgtacaatcattttttttgtacaatcaatacctgagg-gttatc
|||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| ||||||| ||||| || ||| |||   ||  ||  ||  |||| || | |  ||    ||  |||| ||| ||  | |  |   |   ||   |  ||| |||   |||  | | | |  |  
GTACGTTTAAATTGACGCTTCAGTTTACAGAGGATTATCCGAATAAGCCACCAACTGTACGCTTTGTTTCTAGAATGTTCCATCCAAATAgtaagttggacgcaagaactatgcttttacccaattctcactttcaattatgagagttctcagccaacatatgcctaatgtgcaa---atatgtaacgtgcca--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|48575511|gb|CO036440.1|CO036440
EST:     TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA                         TTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
EST: gi|192333434|gb|FK023963.1|FK023963
EST:     TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA                         TTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
EST: gi|10233426|gb|BE802314.1|BE802314
EST:     TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA                         TTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
EST: gi|192297623|gb|FG989571.1|FG989571
EST:     TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA                         TTTATGCAGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
EST: gi|192306185|gb|FG995035.1|FG995035
EST:     TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACA                         TTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
EST: gi|192306775|gb|FG998142.1|FG998142
EST:     TGTTTCATCCTAACA                         TTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
EST: gi|209721200|gb|BW665731.1|BW665731
EST:     TAATAAACCACCTACTG--CGCTTTGTTTCTCGAATGTTTCATCCTAACA                         TTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC
genomic: TAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACAgtgagtacaa ... gcaattatagTTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCC