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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagttattaccatctttcttttcattccttgatttgatctttatattattataacaattcag

Basic information

species Glycine max
transcript GLYMA08G40770.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 4
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagttattaccatctttcttttcattccttgatttg----atctttatattattataacaattcag------
 |||||||| ||||| ||||| ||||||||||||||||| ||||||||| | ||||| || ||| |||||||||||||||| ||||| || || || || ||| |   |||  | | |   |   | ||| ||     |  |   ||   |||    ||  | |||||  | |||  |||||       
AGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGgtatgcaaccatgtttgagaatcaaaacatattagaaatgttcatttagattgtaacattctcatatttct-taaatattcattttcag

upper sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 4
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagtt--attac--------catctttcttttcattccttgatttgatctttatattattataacaattcag
||| |||||||| ||||||||||||||||| |||||||| ||||| ||| ||||||| || ||  | ||||| ||||| || ||||||||  | ||||| ||||||    |    || | ||  |||||        || |   |  ||||   ||||  |   | | ||||||||  ||    | |||
TGCTCTTGGAGCAGCAAAGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTACCGTGATTTTAAAACATCTAATATACTGCTAGATGCTgtaagttttaagtccttgaattggattacgtattgcacaccacacgattcacatcttg--taattttgtatattatgctactcttgcag

upper sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagttattaccatctttcttttcattccttgatttgatctttatattattataacaattcag
||| ||||| ||||| || || || |||||||||||||| ||||||||| |||||||||| ||| |||| |||||||| |||||||| || || ||||| |||||   | |  | || |  | |||  |   ||| ||        ||  ||       ||||| || | |        
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaacta--tattgaaatgttaaaaatattcattcatacaaatgtatttgctaacatatttttttcag-------

upper sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 4
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaat---gttaagttattaccatctttcttttcattccttgatttgatctttatattattataacaattcag
|||||| ||||| ||||||||||| ||||| |||||||| ||||| ||| | ||||| || ||| | ||||| ||||| || ||||||||| ||||||| ||||||     |||    ||| |   |     |||   | || |     ||  |||    |||| ||||  |     |  ||
TGCACTGGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGTCCAGTCATTTATCGTGATTTTAAAACATCTAATATACTACTGGATGCGgtaagttaatgaataggattatgcagtgtgtgtctcattatttacatactg--ttgcatcttatgttatattgcttgtatag

upper sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 4
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagttat-taccatctttcttttcattccttgatt--tgatctttatattattataacaattcag
|||||| ||||| ||||||||||| ||||| |||||||| ||||| ||| ||||||| || ||| | ||||| ||||| || ||||||||  ||||||| ||||||     |||      ||||  |   | |   |  | ||   |  | |  |      ||| ||||  |     | |||
TGCACTCGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTCATTTATCGCGATTTTAAAACATCTAATATACTGCTGGATGCGgtaagttaatgaata--ggattatgcagtgtgtgcttcatgatctatatactgctacatcatatgttatattgcttgtacag

upper sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 4
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagttattaccatctttcttttcattccttgatttgatctttatattattataacaattcag
|||||| || ||||| ||||||||||| ||||||||||||||||| ||| | ||||| |||||| | ||||| || || ||||| || ||||||||||||||||||    |||   |  | ||    ||  ||| | | |     |   |      ||||||| |  ||   | |||||
TGCACTAGGTGCTGCTAAGGGTCTTGCATTTCTTCATGAGGAAGCAGAAAGGCCAGTTATATATCGTGATTTTAAGACCTCCAACATCCTATTGGATGCAgtaagtaat-aaaaactgtgataaattcacgtttgtctcctaatatcattccatcttttatatgac-atcctatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518732|gb|BM187774.1|BM187774
EST:     GACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCA                         GAATACAATTCTAAGCTCTCAGATTTTGGACTTGCAAAAGATGGTCCAGAG
genomic: GACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggcc ... aacaattcagGAATACAATTCTAAGCTCTCAGATTTTGGACTTGCAAAAGATGGTCCAGAG