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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtccaatctgattacag

Basic information

species Glycine max
transcript GLYMA08G40380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgt-atcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtccaatc-tgattacag
 ||||||||||||| || ||||| ||||||||||| || ||||| ||||| || ||||| ||||||||  | |||||||| || ||||| |||||||| |   | || ||| | |    |||| | |     || |||||||     ||  ||||      | ||| |     |  |||   ||| ||   ||||
GTTCTTGAAATGGATACCTACAGGTACCATGGCCATTCTATGTCAGATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcctgtgaccct---taaatttgtg----gtgtaattaacgcc-agatgtttg----gtttttaacgaattattgttttatcatgccaacag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g13720.1 (Oryza sativa), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgat-------cataa--tcaaatgtcttattt----gtttaattaatattgagga-gtttactctatcttttattttctcctgtccaatctgattacag
|||||||| |||||||| ||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||  | ||||| ||| | ||  | ||||||||     |  | |||       ||| |  ||    ||||    |      |||||| | |  || ||  || | |||   |   | ||  |  |||    | |    ||||
ATTCTTGAGATGGACACCTACAGATACCACGGACACTCTATGTCAGATCCAGGGAGCACTTACCGCACCAGAGATGAAATTGCAGGCATAAGACAGgtcaggaatcaggatggccggccatgagctctcgagtctcgactcaaaacttaatttacaccgaagacattcattctgagta--agttgtttgtgttatgt-taccaacag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtc-caatctgattacag
 | ||||| ||||| || |||||||||||||||||||| ||||| ||||| || ||||| ||||| ||  | ||||||||||| ||||| || ||||||         | |  |  |   || | | | |      ||  |  || | |  |    |   | ||| | ||  |  |||  |||| | || |   
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaa--------ggttgt--tttgatctttcagt------atggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag--

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G140150_T01 (Zea mays), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtccaatctgattacag
 | ||||| ||||| || ||||| |||||||||||||| ||||| ||||| || ||||| ||||| ||  | ||||||||||| ||||| || |||||||        |||  |  |  ||| | | | || |  |||| | ||   |   |      ||   || ||| | |    | |||| | || |   
GTCCTTGAGATGGATACCTACAGGTACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtat--------gattgt--tttaatctttcagtt-tggaatttaaatcatgatataagtgttacaattaattctgt----tacaatatcatcag--

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G027627_T01 (Zea mays), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgt--atcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatctttt--attttctcctgtccaatctgattacag-------
|| ||||| |||||||| ||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||| | ||||||||  ||||  | || |||||     |  |  |  ||     ||  ||    || ||||          |||  | |||  | |   || |  ||  |||      | |    ||||          
ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAGGTAGCACCTACCGCACAAGGGATGAGATCGCTGGCATAAGGCAGgtcaggatggcagttgtctcgg-cacttgagaaatgtgttcctcaggggatgaacaatttttttttctttctgaatgatctgtctgtctacggaattatgacacacag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatca--taatcaa--atgtcttatttgtttaattaa-tattgaggagtttactctatcttttattttc---tcctgtccaatctgattacag
|||||||| |||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||   ||| | |  | |  | |  ||  || ||||  | |   | | |  |||||| ||  |  |   |      |  ||    | ||   | || ||| | |||
ATTCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGgttcgttagtctctttacctgaaaaatcatttcttggtcgaggactcagctattgatgaaatctcaaaagtcaaaacatttatgtgctactctatatgact-cag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G24180.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtccaatctgattacag
|| ||||| |||||||| ||||||||||| || ||||| |||||||| || || ||||| |||||||| |||||||| || ||||| ||||||||||| |  | || || ||||    ||   |  |  |      ||    | |  | |  ||  |  |||| | |  || ||   ||     |   |  ||
ATCCTTGAGATGGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgt-tagttctttgttcatttgtaagactactgctccaaccatatgcaatttgaaactt-tttaatctgtaaagttttc--atcggtgttacctttag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatct-tactatgatcataatcaaatgtcttatttgtt-taattaatattgaggagttt------actctatcttttattttctcctgtccaatctgattacag-
||||||||||||||||| || || |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | | |  ||||||  | |   | | | || |||| |  ||    | ||    | ||         || ||   |||  |  |  ||     | || || |   
ATTCTTGAAATGGACACTTATAGGTACCATGGTCACTCCATGTCTGATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatgatatgatattgac--atttttttgtttgctgcaaagcgtgttatcaatttcctagaagttccatgcattaaatatttttggt-ggtatgttttctag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0018g01940.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatct-tactatgatcataatcaaatgtcttatttgtt-taattaatattgaggagttt------actctatcttttattttctcctgtccaatctgattacag
||||||||||||||||| || || |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| | | | |||||||| | |   | | | || |||| |  | |   | ||||  | ||         |  || | |||  |  |  ||          ||  ||
ATTCTTGAAATGGACACTTATAGGTACCATGGTCACTCCATGTCTGATCCTGGGAGTACATACCGTACGCGTGATGAGATTTCTGGTGTGAGACAGgtgtatatgctatgatcttgac--atttttttgtttgctgcagtgtgtgttgacaatttcctggaagtttcatgtattaaatagttttggtggcatgttttctag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S47_1V6.1 (Physcomitrella patens), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtat------------cttactatgatcataat-----caaatgtcttatttgtttaattaatattgaggagtttactctatcttttatt-ttctcctgtccaatctgattacag-----------------------------------------
 |  | || ||||||||||| || || ||||| || |||||||| || || |||||||| ||||| || ||||| ||||| ||||||||  | || |||             ||| || |  ||  | |     |||||  | |       | |  ||| |  | |  |||  |    |  |||||  ||   | | |  |  |    |||                                         
GTCTTGGAGATGGACACATATAGGTATCATGGACATTCCATGTCCGACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttcagttgaacttgctcttttcgaagttagcacaaattacatggaaagatgaccaatttacaaggatttggtactgcggttattgctcaagtatgctgttggtgaccagactatgttttcagtctaacatctttctactcgtgtcaacag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S201_84V6.1 (Physcomitrella patens), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgt---atcttactatgatcataatcaaatgtcttatttgtttaattaatattgagga-gtttactctat-cttttattttctcctgtccaatctgattacag-------------------------
 || | || ||||| || |||||||| ||||| ||||| |||||||| || |||||||| ||||| || ||||||||||| ||||||||  |||||||   ||  || |    |     |  | ||  ||     | |  |   |   ||||   || | | | | |  | | || ||     |||   | |||                             
GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattctaatcaagttgacgttcactgcattgaaactgttttcggttaggagggtattgattgtttgccctgagttgctgagacccagatttattttcttacacttttttgctgatgtatacag

upper sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ36226 (Selaginella moellendorffii), 5'ss of exon 4
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtccaatctgattacag
 |  | |||||||| || ||  | || ||||| ||||||||||||||||| || || ||||| || ||| | || |||||||| || |||||||||||| |||    | || ||  |       ||    | || ||  |||| |  |  |      | |                                 
GTGTTGGAAATGGATACTTATCGTTATCATGGGCACTCCATGTCTGATCCCGGGAGTACATATCGGACAAGGGAAGAGATTTCCGGCGTGAGACAGgtaacttggagtcattatcgtttgcacactgcacttttaaaacaataatttgctgccactgccag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4314061|gb|AI461180.1|AI461180
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|6725662|gb|AW310061.1|AW310061
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|9564374|gb|BE473883.1|BE473883
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|22932271|gb|BU549410.1|BU549410
EST:     TACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGNNACTATTGACTCACGAGATT
genomic: TACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|10848193|gb|BF070736.1|BF070736
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|7591537|gb|AW707268.1|AW707268
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|13312521|gb|BG406172.1|BG406172
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|7692225|gb|AW760338.1|AW760338
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|58018948|gb|CX705690.1|CX705690
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|22931684|gb|BU548823.1|BU548823
EST:     GTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: GTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|193374940|gb|FK338996.1|FK338996
EST:     CACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: CACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: gi|5607004|gb|AI901102.1|AI901102
EST:     ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttact ... ctgattacagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT