Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgtgctaaatacataattaccatttgattgtaggatgaacgtgtaactaaactatggatgtttttaacag

Basic information

species Glycine max
transcript GLYMA08G39420.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39420.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 6
GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtt---tgtgctaaatacataattaccatttgattgtaggatgaacgtgtaactaaactatggatgtttttaacag-------------
|||||||| || |||||||| ||  |||| ||  | ||||| || ||   ||| ||||||||||||||||||||||| || ||||| ||||| |   | |||| | | |  || ||         | |    |  |  | || |||  || | |||      ||||              
GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgcatttgctcattgccaaaatattgcgcctgtttctcttttatatatatctaccctgttgat-ccacaaacatgcaaaatatgcag

upper sequence: GLYMA08G39420.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G60820.1 (Arabidopsis thaliana), 5'ss of exon 6
GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgtgctaaatacata-------attaccatttgat-tgtaggatgaacgtgtaactaaactatggatgtttttaacag----------------
||| |    || ||  | || ||||| |||||||||||  |||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||||| || |||  |   |         | ||||    |  |  ||  ||    |||    | |  ||     |||    ||                 
GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagtt-gtcctatttgtgtcttcttttgtcaccacgccacctaaagcttgcctttgtgctcatatcatttgcatttggttcaagtcttcaaaatattac

upper sequence: GLYMA08G39420.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G60820.2 (Arabidopsis thaliana), 5'ss of exon 6
GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgtgctaaatacata-------attaccatttgat-tgtaggatgaacgtgtaactaaactatggatgtttttaacag--------------------
||| |    || ||  | || ||||| |||||||||||  |||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||||| || |||  |   |         | ||||    |  |  ||  ||    |||    | |  ||     |||    ||                     
GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgtt-gtcctatttgtgtcttcttttgtcaccacgccacctaaagcttgcctttgtgctcatatcatttgcatttggttcaagtcttcaaaatattaccaaa

upper sequence: GLYMA08G39420.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g00900.t01 (Vitis vinifera), 5'ss of exon 6
GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgtg---ctaaatacat--aattaccatttgat-tgtaggatgaacgtg-taactaaactatggatg-tttttaacag---------------
||||||||||||||  | |||||  |||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| ||| |||  |    | |  ||| |  || || |||||      |||        || |   | |||||||   | |  || | ||               
GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaaagtaacatttttcacatagagctgttatgctcttttaactatgttggatccttgaaagtgcttcaggtttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193552196|gb|FK508953.1|FK508953
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACT                         GGAGATAAGGTTGAAATCGTCGTCCTAAATGCCAGTGGTATTC
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTC
EST: gi|193643170|gb|FK590760.1|FK590760
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACT                         GGAGATAAGGTTGAAATCGTCGTCCTAAATGCCAGTGGT
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGT
EST: gi|213592591|gb|DB961851.1|DB961851
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|209712774|gb|BW681630.1|BW681630
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|213601629|gb|DB980886.1|DB980886
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|6963774|gb|AW432467.1|AW432467
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         T
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacag-
EST: gi|6963774|gb|AW432467.1|AW432467
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         T
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacag-
EST: gi|6072538|gb|AW101925.1|AW101925
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|31470501|gb|CD412529.1|CD412529
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|193687919|gb|FK634422.1|FK634422
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACT                         GGAGATAAGGTTGAAATCGTCGTCCTAAATGCCAGTGGTATTCGTCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|209712773|gb|BW681629.1|BW681629
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|208163442|gb|GD959806.1|GD959806
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|10843502|gb|BF066791.1|BF066791
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACT                         GGAGATAAGGTTGAAATCGTCGTCCTAAATGCCAGTGGTATTCGTCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|12773264|gb|BG238191.1|BG238191
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|209720176|gb|BW651178.1|BW651178
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
EST: gi|192321731|gb|FK013165.1|FK013165
EST:     ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC                         GGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA
genomic: ATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgt ... tttttaacagGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAA