Sequence
atgc intronic sequence ATGC exonic sequenceATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGgttagttactgcttcaagattatttgattggcatattatgagaatttatttcagctatgtcttgttctatctaatacttgtggtgttgaaacttgtag
Basic information
species | Glycine max |
transcript | GLYMA08G38990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 4
ATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGgttagttactgcttcaagattatttgattggcatattatgaga-atttatttcagc---tatgtcttgttctatcta-atacttgtggtgttgaaacttgtag--
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ATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGATGGTAGATCCCTGgttagttacc-ctgtcagattctttcacatgcatatcctgggagaaaaagctcaatatatgtggcaaactccttttacacattggtgtatgtgcttcttttacag
upper sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S178_54V6.1 (Physcomitrella patens), 5'ss of exon 4
ATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGgttag--ttactg-cttcaagattatttgattggcatattatgagaatttatttcagctatgtcttgttctatctaatacttgtggtgt--tgaaacttgtag
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ATGCTGAATGTGAAGCAACTGTGAAAGAGCATCCGTCTTTCGTTGAAGCCATGAAGAAACGGGGTATCGAGGATATGGATCTTGTGATGGTGGATCCCTGgtgagccttcttgtctttatactcatttgataacgaagtacactgaggctggtagagttgagactatataaaaacaaagtttaatatgacgtgtaagttg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295328|gb|FG985982.1|FG985982EST: ATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTG GTGTGCTGGATATCACAGTGAAGCTGATGCTCCTAGCCGGAGACTTGCTAA
genomic: ATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGgttagttact ... aaacttgtagGTGTGCTGGATATCACAGTGAAGCTGATGCTCCTAGCCGGAGACTTGCTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGgttagttactgcttcaagattatttgattggcatattatgagaatttatttcagctatgtcttgttctatctaatacttgtggtgttgaaacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT