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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtctctcactttttgcatctacatgttttcatactcaggctcctttatagttactaacttagagagtaaaacaagtaattttagtttacgagaa...

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 4
AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtctctcactttttgcatctacatgttttcatactcaggctcctttatagttactaacttagagagtaaaacaagtaattttagtttacgagaa
|||| |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| || || ||||| || |||||||| ||||| |  |   |   || |  |   | | | | |||| | |         ||| |  |  | | |  || ||  |||  ||                   
AGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcag-------------------

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g52840.1 (Oryza sativa), 5'ss of exon 4
AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtctctcactttttgcatctacatgttttcatactcaggctcctttatagttactaacttagagagtaaaacaagtaattttagtttacgagaa----------------------------------------
|||| |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| || || ||||| || |||||||| ||||| |  |   |   || |  |   | | | | |||| | |         ||| |  |  | | |  || ||  |||  |||   |   |     ||                                           
AGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcagtgcctgatgggagtgaatgatgtgaatttctggtggctctgggttttccttgcgtgcag

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 4
AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgta-tgtgt--ctctcactttttgcatctacatgttttcat--------actcaggctcctttatagttactaacttagagagtaa----aacaagtaattttagtttacgagaa-----------
|||||||||| || ||||| |||||||| || || || || || ||||||||||| ||||| |||||||||||||| |||||||| || || ||||||||||| ||     ||||  |  ||  |||   | || ||   |        || |  |  |   |  ||| |||  ||  | || |||    ||   |   ||||| | |  | |             
AGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcag

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0211g00160.t01 (Vitis vinifera), 5'ss of exon 4
AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtctctcactttttgcatctacatgttttc-----atactcaggctcctttatagttacta----acttagagagtaaaacaagtaatttta--gtttacgagaa-----------------------------------------------------------------------------------------
|||| ||||| |||||||| || |||||||| ||||| ||  ||||||| ||||| ||||| || || || || || || ||||| ||||| ||||||||||| |    | | | |||    |||   || || |       || |     |  ||  | || |       | ||  |  ||  |      | | |||   ||||  |  |                                                                                         
AGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtctattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcag

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 4
AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtctctcactttttgcatctacatgttttcatactcaggctcctttatagttactaacttagagagtaaaacaagtaattttagtttacgagaa------------------------------------------------------------------------------------------------------
|||| ||||| |||||||| || |||||||| ||||| ||  ||||||| ||||| ||||| || || || || || || ||||| ||||| ||||||||||| |    | | | |||    |||   |  ||||| | |   |  |   | ||  ||| |          |||     | |  || | | | |     |                                                                                                      
AGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagatattaatttccttatcatga--ttttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724908|gb|BW669597.1|BW669597
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213597862|gb|DB958243.1|DB958243
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209711968|gb|BW679047.1|BW679047
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209699627|gb|BW655719.1|BW655719
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213619491|gb|DB969442.1|DB969442
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213589006|gb|DB973106.1|DB973106
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213602128|gb|DB962621.1|DB962621
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213611858|gb|DB964806.1|DB964806
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGANACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209715301|gb|BW654188.1|BW654188
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209719837|gb|BW674989.1|BW674989
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209699197|gb|BW656186.1|BW656186
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|120529377|gb|EH257511.1|EH257511
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209708191|gb|BW678561.1|BW678561
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209704314|gb|BW683546.1|BW683546
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|120530707|gb|EH258840.1|EH258840
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|120533051|gb|EH261184.1|EH261184
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209724195|gb|BW659729.1|BW659729
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213592503|gb|DB971645.1|DB971645
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209715019|gb|BW650870.1|BW650870
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209709691|gb|BW668227.1|BW668227
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|14205774|gb|BG839452.1|BG839452
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209728365|gb|BW660003.1|BW660003
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209700117|gb|BW652975.1|BW652975
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209726286|gb|BW680211.1|BW680211
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209716859|gb|BW682261.1|BW682261
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGANACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209708166|gb|BW673829.1|BW673829
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213587729|gb|DB955591.1|DB955591
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209715940|gb|BW650957.1|BW650957
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213597651|gb|DB962561.1|DB962561
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213606611|gb|DB972532.1|DB972532
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213617924|gb|DB957377.1|DB957377
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213601602|gb|DB972366.1|DB972366
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213599231|gb|DB962282.1|DB962282
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|151401941|gb|EV271754.1|EV271754
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         ATATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTATAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213597587|gb|DB962553.1|DB962553
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213617635|gb|DB969347.1|DB969347
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209727410|gb|BW651932.1|BW651932
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209727383|gb|BW651931.1|BW651931
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209725631|gb|BW663120.1|BW663120
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|213587994|gb|DB957453.1|DB957453
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209708194|gb|BW678564.1|BW678564
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAAGCTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAA-GCTT
EST: gi|120533233|gb|EH261366.1|EH261366
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
EST: gi|209710568|gb|BW676520.1|BW676520
EST:     AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGA                         GTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT
genomic: AACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtct ... tccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTGCAAGATATTATGGTGGAAATGAgtatgtgtctctcactttttgcatctacatgttttcatactcaggctcctttatagttactaacttagagagtaaaacaagtaattttagtttacgagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac