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TAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccatatgctttcaacttttgcccctgcaatgttatttcttatgcatgaagttagcatacaggattaagttatgaatatctagtctccgttcactt...
species | Glycine max |
transcript | GLYMA08G36700.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|13789933|gb|BG652524.1|BG652524
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|13789933|gb|BG652524.1|BG652524
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|13789933|gb|BG652524.1|BG652524
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|13789933|gb|BG652524.1|BG652524
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|13789933|gb|BG652524.1|BG652524
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|58017014|gb|CX703756.1|CX703756
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|58017014|gb|CX703756.1|CX703756
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|298194738|gb|HO043210.1|HO043210
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|298194738|gb|HO043210.1|HO043210
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|57575109|gb|CX548084.1|CX548084
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|57575109|gb|CX548084.1|CX548084
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|22524808|gb|BU083619.1|BU083619
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|22524808|gb|BU083619.1|BU083619
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|22524808|gb|BU083619.1|BU083619
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|22524808|gb|BU083619.1|BU083619
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|22524808|gb|BU083619.1|BU083619
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|22524808|gb|BU083619.1|BU083619
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|58015077|gb|CX701819.1|CX701819
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|58015077|gb|CX701819.1|CX701819
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAEST: gi|15813255|gb|BI785530.1|BI785530
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|15813255|gb|BI785530.1|BI785530
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|15813255|gb|BI785530.1|BI785530
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|15813255|gb|BI785530.1|BI785530
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|15813255|gb|BI785530.1|BI785530
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA AEST: gi|15813255|gb|BI785530.1|BI785530
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAA A
genomic: TGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAgtaagccatatgctttcaacttttgcccctgcaatgttatttcttatgcatgaagttagcatacaggattaagttatgaatatctagtctccgttcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC