Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatatttgtttgcttcccaatttacattatttttccttctcgctgttatattttatggccttcacctgtctattatgtggcttcttaaaatctaggc...
Basic information
species | Glycine max |
transcript | GLYMA08G36370.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 4
GTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatatttgtttgcttcccaatttacattatttttccttctcgctgttatattttatggccttcacctgtctattatgtggcttcttaaaatctaggc
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GAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGgtttgtata-atatattaagatcctttctatagtttttctc------gaaatatttgtcgccttaca----tatattacattgcttgttgcag-------
upper sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 4
GTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatatttgtttgcttcccaatttacattatttttccttctcgct-gttatattttatggccttcacctgtctattatgtggcttcttaaaatctaggc
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GTGCTGAAACCACTGCAAGCATCTCTTTCATTCTTTTTGTTTTGTCTTGGATCGTACTTCGCCTAATTTACTATCCATTCTGGATCCTTCGGAGCACAAGgtgagaataagttgg-tgcatagtgtttattggttattatgctcattagacaccccttttctctaatatattcgtattttgcaaaggttttaacttttgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208257721|gb|GE053762.1|GE053762EST: TACCCATTCTGGATTTCTTTGGAGTACAAG CTATGAAGTTCTGCTCACCTTGGATAAAGGAAAAGCACCAAGTGGATGGTC
genomic: TACCCATTCTGGA-TTCTTTGGAGTACAAGgtttatattt ... tttttaccagCTATGAAGTTCTGCTCACCTTGGAT-AAGGAAAAGCACCAAGTGGATGGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatatttgtttgcttcccaatttacattatttttccttctcgctgttatattttatggccttcacctgtctattatgtggcttcttaaaatctaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcacc