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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTGCTCATTGCTTAAATGGAGTAAATGGAGGTGGTATATTTGCTATTGGGCATGTTGTGCAACCTAAAGTGAACATGACTCCATTATTACCAGACCAgtatgctattcacttaatacactttagaatgagagtagtttttcttatagcgttattcattattcttttgaggataagctctttttattttttttatcat...

Basic information

species Glycine max
transcript GLYMA08G29040.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G29040.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G05840.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTTTGCTCATTGCTTAAATGGAGTAAATGGAGGTGGTATATTTGCTATTGGGCATGTTGTGCAACCTAAAGTGAACATGACTCCATTATTACCAGACCAgtatgctattcacttaatacactttagaatgagagtagtttt-tcttatagcgttattcattattcttttgaggataagctctttttattttttttatcat
| ||||||||||||||| |||||  ||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| |||||  ||||  | ||||| |  |  || |   | |  |||| ||||    |  |||| |  |  |     | |||| |     |  | ||||  ||  |                |
TATTTGCTCATTGCTTAGATGGAAGAAATGGAGGTGGTATATTTGCTATTGGACGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTACCCAATCAgtacgtcaa-cattgttttccttttataatgtttttccttttatacttcaaatacaatcataagaagctcaatgatatactggtagaggcagccactatgt

upper sequence: GLYMA08G29040.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 4
TGTTTGCTCATTGCTTAAATGGAGTAAATGGAGGTGGTATATTTGCTATTGGGCATGTTGTGCAACCTAAAGTGAACATGACTCCATTATTACCAGACCAgtatgc---tattcacttaatacactttagaatgagagtagtttttcttatagcgttattcattattcttttgaggataagctctttttattttttttatcat
||||||| || |||||| ||||  ||||||||||||| || ||||||||||||||| ||||||| || ||||| ||||  ||||||||  ||||| |||||||||    ||||    |   |   | |   |  | | ||     |  | | | |   || ||| || ||||     |  ||  | | |||||||||| ||  
TGTTTGCACACTGCTTAGATGGTTTAAATGGAGGTGGGATCTTTGCTATTGGGCATATTGTGCAGCCAAAAGTTAACACAACTCCATTGGTACCAAACCAgtatgtatatatttctctgtgaacgtctgataaaaaaataaaaaattctgt-gtgaactttattgttgtttttgatctttgcagtctctattttttttttc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16995907|gb|BM085279.1|BM085279
EST:     GGGCATGTTGTGCAACCTAAAGTGAACATGACTCCATTATTACCAGACCA                         GCCACACTACAGTGTCAATATGACTGCAGTTCAAGTTGGCCATACTTTCCT
genomic: GGGCATGTTGTGCAACCTAAAGTGAACATGACTCCATTATTACCAGACCAgtatgctatt ... gtttttttagGCCACACTACAGTGTCAATATGACTGCAGTTCAAGTTGGCCATACTTTCCT