Sequence
atgc intronic sequence ATGC exonic sequenceGTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTgtaagtttcttctttttcttagtattctcaactcaagtgtataattatccacagaagacaggctgtttccatggcactacatgttccgtttatgcttgga...
Basic information
species | Glycine max |
transcript | GLYMA08G28600.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTgtaagtttcttctttttcttagtattctcaactcaagtgtataattatccacagaagacaggctgtttccatggcactacatgttccgtttatgcttgga-
| | ||||||||| | |||| ||| | || | ||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| || | || || || || || | | || || || | || | ||| | || || | | || ||| | | | |
CTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTgtaagttactgatgcttttttgtttttccat----gatatttagttttc---ataattttgttaccttctaatgctctgctttttttttttgcgttggcag
upper sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 3
GTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTgtaagtttcttctttttcttagtattctcaactcaagtgtataattatccacagaagacaggctgtttccatggcactacatgttccgtttatgcttgga--
||||| |||||| || | |||||| | ||| |||| |||||||||||||||||||| || ||||||||||| | || || |||||||||||||||||||| | | | | | | | | | || | || | | | | || ||| | | || | |
GTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACTgtaagtttcttcttttagtgcttgatttttttttggctctcctaatttcacttcactgcaatatctgtttgtttcag-acacatat-ataggtgtcagaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208270932|gb|GE069912.1|GE069912EST: CAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACT GCCATCCACGCATTATTCATCGAGATATTAAGTC
genomic: CAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTgtaagtttct ... aatttatcagGCCATCCACGCATTATTCATCGAGATATTAAGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTgtaagtttcttctttttcttagtattctcaactcaagtgtataattatccacagaagacaggctgtttccatggcactacatgttccgtttatgcttgga
- - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA