Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattctcatcttgtattcataaggttaatacaatatcaatttgcttgctatgatgatgtagtgttcggatttctttatactctagtcgtcattcttcttgttggagtatgattttttgtgtttctctcactctcaactatttctgatatacttttacttatttctgtttttcctccactgctttccag

Basic information

species Glycine max
transcript GLYMA08G28320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28320.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 5'ss of exon 3
TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattctcatcttgtattcataaggttaatacaatatcaatttgcttgctatgatgatgtagtgttcggatttctt-tatactctagtcgtcattcttcttg--ttggagtatgattttttgtgttt------ctctcactctcaactatttctgatatacttttacttatttctgtttttcctccactgctttccag
|||||||| || |||||||| ||| | |||||||| |||||||||||||| ||||||||||| ||| | |||  ||| |||||| ||||  ||| || ||||     | | |   ||   ||| ||  |  || |||    || ||  |  || | || | || |||   | ||||| ||  |   |||||      || |||  ||          ||   ||| ||    || | |   |      || |||  ||       |    |   ||  ||
TGCAGGAAACAGAAAGATCTATATTTATGGATGGCCAAATGCCCCAATGGTCCATCTGTAAAATTTATGGTTGATGCTGgtaattttctgctctagt-ttcaagtattcatttgcatggtaatatgagtttta-gattgcctaatggacatatattttatgtattctg--catcattttttgtaccttggaactaacttatttaagtaagagggatcctttttcttaa--gattttaaggaagaacagctaattaatgagacatattttgtttattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181521|gb|BG352861.1|BG352861
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|151396331|gb|EV266208.1|EV266208
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|151409158|gb|EV278966.1|EV278966
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|298197751|gb|HO039290.1|HO039290
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACTCAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|151399665|gb|EV269536.1|EV269536
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTGCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|151412110|gb|EV281922.1|EV281922
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|213619549|gb|DB957250.1|DB957250
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACNAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|17154077|gb|BM144010.1|BM144010
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: gi|15815223|gb|BI787498.1|BI787498
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG                         TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC