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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGTATTCCTATGGCAGGAATGGTGGACTCTTTCAATGTTTCAGTTGCTGCGGGAATCCTCATGCACCACTCTGTTTGTGATAGAATATCTCGTATGgtaatgattttagtttatgtactttatgtggtgcagaatgacaaatcaattttaattgaatcttatatctgggttttgtgattcaaacattgatattgta...

Basic information

species Glycine max
transcript GLYMA08G26320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G026869_T01 (Zea mays), 5'ss of exon 4
TTGCAGTATTCCTATGGCAGGAATGGTGGACTCTTTCAATGTTTCAGTTGCTGCGGGAATCCTCATGCACCACTCTGTTTGTGATAGAATATCTCGTATGgtaa-tgattttagtttatgtactttat-gtggtgcagaatgacaaatcaattttaattgaatcttatatctgggttttgtgattcaaacattgatattgta--
 ||||| ||||| |||  ||| |||||||| || || ||||| || ||||| || |||||||||||||||||  |||||||||||||| | || ||  |||||| ||   ||  || || |   ||||  | || |   |  | ||  ||   | ||   || |   |||  |     | |   || | |||  |||  |||  
CTGCAGCATTCCAATGAAAGGCATGGTGGATTCGTTTAATGTATCTGTTGCAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggactttcttcattttagttatcatcgtacctta-aagaagacatgataaacccaacccactattagcaaagttta--tctatcatc-atacggtact

upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0108g01380.t01 (Vitis vinifera), 5'ss of exon 4
TTGCAGTATTCCTATGGCAGGAATGGTGGACTCTTTCAATGTTTCAGTTGCTGCGGGAATCCTCATGCACCACTCTGTTTGTGATAGAATATCTCGTATGgtaatgattttagtttatgtact-ttatgtggtgcagaatgacaaatcaattttaattgaatcttatatctgggttttgtgattcaaacattgatattgta-------
|||||||||||| |||  ||| ||||||||||| |||||||||||||||||||| || ||||||||||||||  |||||||||| ||||  |||||  ||||||| ||   | ||| || ||  |  |||| |||| |      ||||||| | ||||   ||  | ||       |  ||  |  | | ||  ||||| |       
TTGCAGTATTCCAATGAAAGGCATGGTGGACTCCTTCAATGTTTCAGTTGCTGCTGGGATCCTCATGCACCATGCTGTTTGTGACAGAACGTCTCGCCTGgtaataatgaca-tttttgcacaatcttgtgttgcataggagagaatcaatctaaatt---tcccagataga----tcatggattgaccttttgtattgaatgtttcc

upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S333_10V6.1 (Physcomitrella patens), 5'ss of exon 6
TTGCAGTATTCCTATGGCAGGAATGGTGGACTCTTTCAATGTTTCAGTTGCTGCGGGAATCCTCATGCACCACTCTGTTTGTGATAGAATATCTCGTATGgtaatgattttagtttatgtactttatgtggtgcagaatgacaaatcaattttaattgaatcttatatctgggttttgtgattcaaacattgatattgta
 ||  | ||||||||||  || |||||||| ||||||||||| ||||||||||| |||||  | ||||| ||  |||     || |||||    ||    ||||      |   ||||  |||| |     |   |  ||||   |    |||  || |                                         
GTGTTGCATTCCTATGGGGGGCATGGTGGAGTCTTTCAATGTCTCAGTTGCTGCCGGAATAATAATGCATCATGCTGCCCACGACAGAATTATCCGCTCTgtaagccaactttcttat-cacttca----attttgtttgacgtttggtgtttctttaag----------------------------------------