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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTATATCTAAGATGGCCATGTTGCTTGCACTTGTCATTCTTTGCATATATTTGTTTCGCAGTACAAATCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacttcaaaaattatatatatatatatatatatatatatgctgtgaatcttttcttctaccttttacttgttctgatctgtcatttacatcttgtttcag

Basic information

species Glycine max
transcript GLYMA08G24120.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24120.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGTATATCTAAGATGGCCATGTTGCTTGCACTTGTCATTCTTTGCATATATTTGTTTCGCAGTACAAATCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacttcaaaaattatatatatatatatatatatatatatgctgtgaatcttttcttctaccttttacttgttctgatctgtcatttacatcttgtttcag
| | |||||| ||||||||||| ||||| ||  |||| ||||||||||||||| | || || ||   || ||| || || ||  || ||||  | ||||||||          | ||| ||   || ||  | | | || |  | |  |||||||    |   | | | |    || | |  | |||   || ||| | |||
GCACTATATCCAAGATGGCCATTTTGCTAGCTTTTGTGATTCTTTGCATATATCTATTCCGTAGCTTAACTCCCCAGCAAGAGGCTGCTGGTTTAGGAAGgtgc---------tgatacatgattacattcaca-agatttatttt--atcttttgaattgt-tgtgaatgaagcttagccat-attactattttgctgcag

upper sequence: GLYMA08G24120.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTATATCTAAGATGGCCATGTTGCTTGCACTTGTCATTCTTTGCATATATTTGTTTCGCAGTACAAATCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacttcaaaaattatatatatatatatatatatatatatgctgtgaatcttttcttctaccttttacttgttctgatctgtcatttacatcttgtttcag
||| ||| || |||||||| ||||| || || ||||| || ||| |||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||   || |  ||| ||||     |  || | | |  |       | |||| |  |  ||  |   | ||||||| ||       ||||           
GGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCATATATTTGTTTCGCAGTACAACTCCTCAACAAGAATCTTCTGGCATAGGAAGgtgataacagat-ttacatattagattgcatctct-tccacatcaatattcttgtgatgaacgat---cctgttctggtcctgttgatacag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193707476|gb|FK642750.1|FK642750
EST:     TATTTGTTTCGCAGTACAAATCCTCAACAGGAATCTTCTGGCCTGGGAAG                         GACAACTTCTGCATACATCACTGTAGCTTCTTTCCTTTTAGGTGCCCTTTG
genomic: TATTTGTTTCGCAGTACAAATCCTCAACAGGAATCTTCTGGCCTGGGAAGgtgacttcaa ... cttgtttcagGACAACTTCTGCATACATCACTGTAGCTTCTTTCCTTTTAGGTGCCCTTTG