Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCGGACTAGTAGGCCTTCAAGTATATCCATTAGTAATACAACAGCATTTCAACATAAACTGACAAGCAGTGCCCATCGCTTCAATTTGATGGTTCAGgtgagaatttctgtcttgacttgatattgacttgtaacactgaagtactgatcaatgtttggaatggtttcagaacagagatgttgcatttgttgggaca...

Basic information

species Glycine max
transcript GLYMA08G23840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 3
TCGCCGGACTAGTAGGCCTTCAAGTATATCCATTAGTAATACAACAGCATTTCAACATAAACTGACAAGCAGTGCCCATCGCTTCAATTTGATGGTTCAGgtgagaatttctgtcttgacttgatattgacttgtaacactgaagtactg-atcaatgt-ttggaatggtttca-gaacagagatgttgcatttgttgggaca--
 ||||   || | |||||||| ||||| ||  || |||| ||||||||||| || ||||||||  |||| ||||| ||||| || ||||||||||| |||||||  |  | ||| ||  ||| | |||  | | | | | |||  |  || ||| || | |  |  || || || |  |    || |    ||||||  |  |  
ACGCCAATCTGGCAGGCCTTCTAGTATGTCTCTTGGTAACACAACAGCATTCCACCATAAACTTTCAAGTAGTGCTCATCGGTTTAATTTGATGGTCCAGgtgaatagct-tgtttttgctt-acatt--cgtatca-attgatatcttggatctatttgtctgtgtgcttgcacgtgccagcatttcctttttgttaagcaacc