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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgtaacttttgactctataatatgaacaagtgatcttgttctttttttgcttcactcatatctccatatatgtttggaatcaatagtgattaggt...

Basic information

species Glycine max
transcript GLYMA08G23730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 4
ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgtaact----tttgactctataatatgaaca-agtgatcttgttctttttttgcttcactcatatctccatatatgtttggaatcaatagtgattaggt
||||||||||||||||||| ||||| || |||||| |  | || || ||||||||||| ||||| ||||| || || ||  | |||||||  ||  |||||||||| |||||    ||| ||  || |  ||| ||| | || |           |||  ||   ||   || | | | |   ||      | |||   ||||| 
ATGGTGTCAATAGCTTTGGTGGTCTCGGGGCAACTCTTGTGGACTCACTTGATACACTGTATATAATGGGCCTAAAGGATGAATTTCAGAGGGCCAGAGAgtgagtttaactattttttcaccatacagaatgtacataatgcttcctcatgcgctttaatttggtccattcacgacagagactt----ctattagattttagg-

upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgtaacttttgactctataatatgaacaagtgatcttgttctttttttgcttcactcatatctccatatatgtttggaatcaatagtgattaggt
|||||||  | |||||||| || || || |||||| | |||||| |  | || ||||||||||| ||||||||  | || ||||||||||||||  ||||||||||  |  | ||   ||       |    | |     |  ||||   ||  |||     | |    | | | |  |   | | |  |     || ||
ATGGTGTTGACAGCTTTGGTGGCCTGGGTGCAACTATGATAGATGCATTAGACACACTATATATAATGGGTCTAGATGAGCAGTTTCAGAAAGCCAGAGAgtgagtagatttcttccatcctagccttttttaggaagattctttctggcttgacttgttctaaacaggcttgtctcatcttattgagaaaaatataagt

upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgtaacttttgactctataat-atgaacaagtgatcttgttcttttt--ttgc---ttca----ctcatatctccatatatgtttggaatcaatag-tgattaggt-----------
||||     |||||||||| || |||||||||||| |  |||||||| | |||||||| ||||| ||||||||  | || |||||||| |||||  ||||||||||  || |   | ||||  | | ||  | | || |   | ||| |     ||||   | ||     | |  ||| ||| | || |     ||| | | | |||   |           
ATGGCACTGATAGCTTTGGTGGCCTTGGAGCAACTATGGTAGATTCTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTCAAAAAGCCAGAGAgtgagt--aattgcaggctcttcatttattcatatgtaactgttttcgtcccagttgcaaatccaactttttacttcttcatctttgctaatcttcatttgcttattgtcttttatttgcag

upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 4
ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgt-aacttttgactcta--taatatgaacaagt--gatcttgt-tctttttttgcttcactcatatctccatatatgtttggaatcaatagtgattaggt
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||  | || ||||| || | |||  |||||||||| | | ||||  | | |      | | ||  | |  ||| || | ||||||| |||  || |   ||     ||  | ||       | ||          
ATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagttttagctttctattgtcgtctgtctcaattacttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238005|gb|BE806893.1|BE806893
EST:     GATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGA                         ATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTG
genomic: GATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgtaa ... gctctgacagATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTG