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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATGCATTAAAAAACTTAGGTCTCAATGTTGTTAAGGCAAATGTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgttacatgcattatgtatgtaactgttatgcatgtgttgctccctgtattggtcttgtgttattactgatgtatgctaaatggtagctaaaaat...

Basic information

species Glycine max
transcript GLYMA08G23440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23440.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 4
ATGAATGCATTAAAAAACTTAGGTCTCAATGTTGTTAAGGCAAATGTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgttacatgcattatgtatgtaactgttatgcatgtgttgctccctgtattggtcttgtgttattactgatgtatgctaaatggtagctaaaaat--
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ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgtggagtagaatttagatg-catttttgcttcaattcccatatctatcaattcttttctttcattccaccttgttac-tgatatctcccaattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298594|gb|FG988535.1|FG988535
EST:     GTCTTTCTGGATTCATCTGGCAAGTACAACAAGTTCTCCATCACAAAAGC                         TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
EST: gi|213590366|gb|DB963887.1|DB963887
EST:     GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC                         TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
EST: gi|192326608|gb|FK017295.1|FK017295
EST:     GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC                         TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
EST: gi|151405909|gb|EV275724.1|EV275724
EST:     GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC                         TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT