Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtaccagaatattccttgtttctcttaatgtcttcttgcatgtgaccttcttcccagggtgatgaaaaaggctagaattcttggttatggtgtttatgagggggtgaacgacttgttttgatttcag

Basic information

species Glycine max
transcript GLYMA08G22410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 5'ss of exon 4
GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtaccagaatattccttgtttctcttaatgtcttct-tgcatgtgaccttcttcccagggtgatgaaaaaggc-tagaattcttggttatggtgttta-tgagggggtgaacgacttgtttt--gatttcag
|||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| ||| ||   | |    || ||   ||   ||| | | |||  |  || |     |          | ||    |   | |  |||||||  | ||  || ||  |  |    | |   | |||||||  |  | |||
GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctctgtcacttactctctttaattattattttccatttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190828|gb|HO032949.1|HO032949
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192302311|gb|FG996649.1|FG996649
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|298175877|gb|HO015282.1|HO015282
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|6566901|gb|AW234533.1|AW234533
EST:     AAATCTTACTATGATAAAAGGATAGTCGGATGCCCGAG-AGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: AAATCTTACTATGATAAAAGGATAGTCGGATGCCC-AGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192330664|gb|FK021969.1|FK021969
EST:     CAAATCTTATTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGCTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|6724900|gb|AW309299.1|AW309299
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|10237010|gb|BE805898.1|BE805898
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|298163725|gb|HO012458.1|HO012458
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192297284|gb|FG992393.1|FG992393
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|17518872|gb|BM187914.1|BM187914
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|15000343|gb|BI321157.1|BI321157
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192325877|gb|FK016554.1|FK016554
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|193648660|gb|FK600627.1|FK600627
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|298179041|gb|HO024776.1|HO024776
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|15813798|gb|BI786073.1|BI786073
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|14011794|gb|BG726716.1|BG726716
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|193708684|gb|FK648534.1|FK648534
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|209715584|gb|BW674321.1|BW674321
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192330663|gb|FK021968.1|FK021968
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGCTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|298198446|gb|HO039985.1|HO039985
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGACGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|16346699|gb|BI972294.1|BI972294
EST:     CAAATCTTACTATGATAAAATGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGCAGAAAG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAG
EST: gi|10847095|gb|BF069862.1|BF069862
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|38192769|gb|CF921975.1|CF921975
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGGGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192297285|gb|FG992394.1|FG992394
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTTTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192310382|gb|FK002262.1|FK002262
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|208172653|gb|GD972882.1|GD972882
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|11275029|gb|BF325353.1|BF325353
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|192302312|gb|FG996650.1|FG996650
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTTTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|207802763|gb|GD773976.1|GD773976
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|15338027|gb|BI498683.1|BI498683
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAA
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAA
EST: gi|7590619|gb|AW706367.1|AW706367
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|209715583|gb|BW674320.1|BW674320
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|7924358|gb|AW830384.1|AW830384
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTT
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTT
EST: gi|192324441|gb|FK015792.1|FK015792
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
EST: gi|22540930|gb|BU090773.1|BU090773
EST:     CAAATCTTACTATGATAAAAGGATAGTCGTATGCTCAGGAGGTGAAGGTG                         AGGATGAGCATGGTGTTGTC
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTC
EST: gi|298185232|gb|HO030445.1|HO030445
EST:     CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG
genomic: CAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGgtgagtacca ... ttgatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACG