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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAGAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGgtagcatcttaaatgcatttgcctttagttgcttctctataatcaataaatttgacttggatgttagtctttgattatgctggcatgtacttaagtttga...

Basic information

species Glycine max
transcript GLYMA08G22180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 4
GTCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAGAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGgtag---catcttaaatgc---atttgcctttagttgcttc-tctataatcaataaatttgacttggatgt-tagtctttgattatgctggcatgtacttaagtttga
 |||||| |||||||||||||||||||||| || ||||| ||||| ||||  |||||||| || || |||||||| || || ||||| || ||| | |||||       | |||  |||   | || ||| |  |    || | |  |  | ||||||  |    | || | | | | |     || |    || |  ||        
ATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGAAGATTGATCCAGATAACATTGAAATACTACGGGACCTCTCCCTCTTGCAGgtgaatttgtattatgtgctgaactttcctctgttattgtcatttgcagcccataaatcaggagagaatatctcgacatcatccattcccatatatcttt--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185075|gb|HO030288.1|HO030288
EST:     GAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAG                         GCACAAATGCGAGATTTGTCAGGCTTTGTCGAGACAAGACAACAACTTTTG
genomic: GAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGgtagcatctt ... tcactcacagGCACAAATGCGAGATTTGTCAGGCTTTGTCGAGACAAGACAACAACTTTTG
EST: gi|213597791|gb|DB960348.1|DB960348
EST:     GAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAG                         GCACAAATGCGA
genomic: GAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGgtagcatctt ... tcactcacagGCACAAATGCGA
EST: gi|209728655|gb|BW660270.1|BW660270
EST:     GAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAG                         GCACAAATGCGAGATTTGTCAGGCTTTGTCGAGACAAGACAACAACTTTTG
genomic: GAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGgtagcatctt ... tcactcacagGCACAAATGCGAGATTTGTCAGGCTTTGTCGAGACAAGACAACAACTTTTG