1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAAAAGTATTAGCCATGTCATCATTGGATTGAAGACAGTGAAAGGAACAAAGCAACTCAAGTTGGATCCTACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtctctaatttcctcttgttctgtgtgtgctccattgtgtaactaagatattgcaagttataaatttcttttctttattttgtatgaagctgttttagttttgaagttgtgtaatatttgtgtcaacaaatctgatgttatgattgggggatttttgccaacatgccag
species | Glycine max |
transcript | GLYMA08G21830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATATATGATGCCTTGATTAAGGAAAAG ATAGCTGTTGGCGATGTTATATACATTGAGGCAAATAGCGGGGCTGTAAAAEST: gi|151406331|gb|EV276146.1|EV276146
genomic: ATATATGATGCCTTGATTAAGGAAAAGgtgaggtctc ... aacatgccagATAGCTGTTGGCGATGTTATATACATTGAGGCAAATAGCGGGGCTGTAAAA
EST: AGCAACTCAAGTTGGATCCTACCATATATGATGCCTTGATTAAGGAAAAG ATAGCTGTTGGCGATGTTATATACATTGAGGCAAATAGCGGGGCTGTAAAAEST: gi|208298810|gb|GE091421.1|GE091421
genomic: AGCAACTCAAGTTGGATCCTACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtctc ... aacatgccagATAGCTGTTGGCGATGTTATATACATTGAGGCAAATAGCGGGGCTGTAAAA
EST: AGCAACTCAAGTTGGATCCTACCATATATAATGCCTTGATTAAGGAAAAG ATAGCTGTTGGCGATGTTATATACATTGAGGCAAATAGCGGGGCTGTAAAA
genomic: AGCAACTCAAGTTGGATCCTACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtctc ... aacatgccagATAGCTGTTGGCGATGTTATATACATTGAGGCAAATAGCGGGGCTGTAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAAGTATTAGCCATGTCATCATTGGATTGAAGACAGTGAAAGGAACAAAGCAACTCAAGTTGGATCCTACCATATATGATGCCTTGATTAAGGAAAAGgtgaggtctctaatttcctcttgttctgtgtgtgctccattgtgtaactaagatattgcaagttataaatttcttttctttattttgtatgaagctgttttagttttgaagttgtgtaatatttgtgtcaacaaatctgatgttatgattgggggatttttgccaacatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA