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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGGAGCCAAAAAGGTGAAAACAGAGTGTAATCTGTTCAGAGAATATTGCAGGGCAGGAAATGCAGAAGGgtaatatatctttcactattatattatagttttaatctcgatttgttttacacaagatgccaagtcagggcacataactgaaggcatatgtgcaaaacattaaataaataaaaatgttccagtgacccaattgtaaattttgctaaacaatgatggtactgtttttgtttgaatatgcag

Basic information

species Glycine max
transcript GLYMA08G21510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g03520.t01 (Vitis vinifera), 5'ss of exon 4
CATAGGAGCCAAAAAGGTGAAAACAGAGTGTAATCTGTTCAGAGAATATTGCAGGGCAGGAAATGCAGAAGGgtaatatatctttcactattatattatagttttaatctcgatttgttttacacaagatgccaagtcagggcacataactgaaggcatatgtgcaaaacattaaataaataaaaatgttccagtgacccaattgtaaattttgctaaacaatgatggtactgtttttgtttgaatatgcag
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CATTGGAGCCAAAAAGGTAAAGGGTGAATGCACACTGTTTAGAGAATATTGCAAGGCAGGAAATGGAGAAGGgtaa---gtccatttctact------tagctttc-tcataatcaaacc--cccaagtagacagtccagattattgattttt---ccctcttcccaaatcttgattcattggcttc-----------------------------------------------------------------