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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgtttctccctctattagtgtggtttctcatgttatgcattttttgtttttaaacttcttattagagtttgtttgtaacagaacatggtgataac...

Basic information

species Glycine max
transcript GLYMA08G20940.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19052672|gb|BM731339.1|BM731339
EST:     GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATAACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG
EST: gi|151399149|gb|EV269020.1|EV269020
EST:     GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATAACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG
EST: gi|193653142|gb|FK599028.1|FK599028
EST:     GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATAACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG
EST: gi|193509174|gb|FK465658.1|FK465658
EST:     GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATAACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG
EST: gi|193545440|gb|FK499537.1|FK499537
EST:     GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATAACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG
EST: gi|151410528|gb|EV280343.1|EV280343
EST:     GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATGACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG
EST: gi|151408650|gb|EV278458.1|EV278458
EST:     GCGGTCTAAGTACTTCCAATCGATGCTTCCAAATAAGGGTTGTTGCGCAG                         GATGACGATGCAGATGGGCCAATAACTAATCCAG
genomic: GCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgttt ... atttgaacagGATGACGATGCAGATGGGCCAATAACTAATCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAATAAAGGTTGTTGCGCAGgtaaatgtttctccctctattagtgtggtttctcatgttatgcattttttgtttttaaacttcttattagagtttgtttgtaacagaacatggtgataac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc