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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGTACAGTTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgagtatttttggattcacatatgacattatttcttacaagtaatgacttagctcttgcagaatttagcctattttagtgccatcacatttttt...

Basic information

species Glycine max
transcript GLYMA08G20930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20930.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G51720.1 (Arabidopsis thaliana), 5'ss of exon 4
TAGGGTACAGTTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgagtatttttggattcacatatgacattatttcttacaagtaatgacttagctcttgcagaatttagcctattttagtgccatcacatttttt-------------------------------------------------------------
||| || ||||| |||||  |  |||||||||||||||| ||||| || ||||| ||||| ||||| |||||  ||||||| || ||||| ||| | |||||| | ||| |    |  |  | | ||   |   |||||| |   | |  |  ||||  | |  |   ||   |  | |  |  | |     | ||||                                                               
TAGAGTTCAGTTCAACCAAGCTCTGGGTCCATGTAGGGGAGGTATCCGATTTCACCCATCCATGAACTTAAGCATTGCCAAATTTCTTGGCTTTCAGCAGgtactgtgatttccatcag--ttatattccattatatttcctctgatt--tctcttatttttcaccttatactgtttgtcattttccttcttctttttcccggttgccaccttaactgttcttatgattcagaattgtaatgggtttttaatctttcgcag

upper sequence: GLYMA08G20930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 3
TAGGGTACAGTTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgagtatttttggattcacatatgacattatttcttacaagtaatgacttagctcttg-cagaatttagcctattttagtgccatcacatttttt-
  | || || ||||||||| || ||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||| || |||||||||||||||   |    ||   |||  |  |||   |   |    ||| |  |   |   | |||| |   |   || |    || ||   ||   |||| ||     
CCGCGTTCAATTTAACCAGACATTGGGTCCTTGTAGGGGTGGTATTCGTTTTCATTCATCAATGAACTTAAGTATTGCCAAGTTTCTCGGTTTTGAACAGgtacccttttcatccatggtgtttcatt--attcttccactttccggctgtagttcagctttcaacttcatcttagatagttgtttggtttcaccttccccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208082626|gb|GD885168.1|GD885168
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|193529861|gb|FK485710.1|FK485710
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|7924271|gb|AW830297.1|AW830297
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|16997272|gb|BM086644.1|BM086644
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|193578443|gb|FK537663.1|FK537663
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|193399675|gb|FK363522.1|FK363522
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|193604120|gb|FK555529.1|FK555529
EST:     CCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: CCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|207844666|gb|GD816629.1|GD816629
EST:     TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|208225726|gb|GE025893.1|GE025893
EST:     TTCATCCATCAATGAATTTAAGTGTTACCAAGTTCCTTGGTTTTGAACAG                         ACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGA
EST: gi|208167267|gb|GD963057.1|GD963057
EST:     TTCATCCATCAACGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGA-CAG                         AACTTTAAAGAATGCCTT
genomic: TTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGgtattatgag ... ttctctgcagA-CTTTAAAGAATGCCTT