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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCTATTCTGTTTAATgtaacttgaaccacaatttgattctaaaaaacaatgaaaccattggatcatatactggaaactattctgatttatgttatgcaattgcag

Basic information

species Glycine max
transcript GLYMA08G20780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 2
GATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCTATTCTGTTTAATgtaacttgaaccacaatttgattctaaaaaacaatgaaaccattggatcatatactggaaactattctgatttatgttatgcaattgcag
||||||||| ||||| || ||||| ||||||||  ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||| |  |||| || |||||||             |||| | |  |||   ||| |   ||  ||  ||  |    |  ||  |   || |   |||||| |||||||
GATTCAACTTGCTCGAGCTGTCTACAATGATGCCAATATCTACCTCCTGGATGACCCTTTTAGTGCAGTAGATGCACATACAGCTGCAGTTCTTTTCAATgtaa-----------gattgaatatgtaaac--atgcatatatacgaatatggagaaaactctgattgaatctgaattatgccattgcag

upper sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 3
GATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCTATTCTGTTTAATgtaacttgaaccacaatttgattctaaaaaacaatgaaaccattggatcatatactggaaactattctgatttatgttatgcaattgcag
||||||||| ||||| ||  ||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| ||||| ||| | ||||| || |||||||     || | |||   || |||||   ||       | |        |||| | ||     | ||| | |   ||||| |||||||
GATTCAACTTGCTCGGGCTCTCTATAATGATGCCGAAATCTACCTCCTGGATGACCCTTTTAGTGCAGTAGATGCACATACAGCTGCAATTCTTTTCAATgtaa----gacta-aat---atactaaactgca-------cgtgcacatgcataccgaaa----ctttgactgaa--tatgccattgcag

upper sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 14
GATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCTATTCTGTTTAATgtaacttgaaccacaatttgattctaaaaaacaatgaaaccattggatcatatactggaaactattctgatttatgttatgcaattgcag
||| ||||| ||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| ||| | ||||| || |||||||   ||   |  || | |  ||  | |  |||      || | | | |  |||| |           |||   |||  ||| |||||
GATGCAACTTGCTCGAGCTGTCTATAATGATGCCGATATCTACCTCCTGGATGACCCTTTTAGTGCAGTAGATGCACATACAGCTGCAATTCTTTTCAATgtaa---gattgaatatgttagcctgcagataaatttgcatatggaaacttcaactgaa-----------tttcaattacacaactgcag