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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACTCACATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaacttcaccacatttttctgttttcttgatttcattcatgaccctatgatccaaacaactgaaacaagggacttttgtccaggactcaagat...

Basic information

species Glycine max
transcript GLYMA08G20700.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410451|gb|EV280266.1|EV280266
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|208254965|gb|GE056915.1|GE056915
EST:     CCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|151396695|gb|EV266568.1|EV266568
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|213616508|gb|DB965555.1|DB965555
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|193568335|gb|FK523902.1|FK523902
EST:     CCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|208101378|gb|GD897687.1|GD897687
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|192329211|gb|FK020130.1|FK020130
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|193521327|gb|FK478590.1|FK478590
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAG
EST: gi|193344013|gb|FK311941.1|FK311941
EST:     CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGG                         GTGTTTGATGTCTTTGATG
genomic: CATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaa ... aattttctagGTGTTTGATGTCTTTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAACTCACATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGgtatatgcaacttcaccacatttttctgttttcttgatttcattcatgaccctatgatccaaacaactgaaacaagggacttttgtccaggactcaagat

- - - - - - - - - -  TTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - GGAGAA